Browse Element(s) Details


OsAffx.11769.2.S1_at

Description tigr:9629.m06682
TID=OsAffx.11769.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6728011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g67250Os.27893.2.S1_at11/111+39352139..39361899N terminus of Rad21/Rec8 like protein, expressed
LOC_Os01g67250Os.27893.1.S2_at11/111+39352139..39361899N terminus of Rad21/Rec8 like protein, expressed
LOC_Os01g67250Os.27893.1.S1_at11/111+39352139..39361899N terminus of Rad21/Rec8 like protein, expressed
LOC_Os01g67250Os.27893.3.S1_x_at10/111+39352139..39361899N terminus of Rad21/Rec8 like protein, expressed
LOC_Os01g67260OsAffx.23952.1.S1_at11/111+39367480..39368971hypothetical protein
LOC_Os01g67270OsAffx.23953.1.S1_at8/111+39373991..39374761expressed protein
LOC_Os01g67280OsAffx.11769.1.S1_s_at11/111+39376689..39378379hypothetical protein
LOC_Os01g67280OsAffx.11769.2.S1_at11/111+39376689..39378379hypothetical protein
LOC_Os01g67290Os.10859.1.S1_a_at11/111+39379134..39385378cyclin, putative, expressed
LOC_Os01g67300OsAffx.23954.1.S1_at11/111+39390294..39392106expressed protein
LOC_Os01g67300Os.16281.1.A1_s_at3/111+39390294..39392106expressed protein
LOC_Os01g67310Os.15943.1.S1_at11/111+39393026..39395480Patatin-like phospholipase family protein, expressed
LOC_Os01g67314Os.36852.1.S1_at11/111+39396981..39399517expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11769.2.S1_at--113--2031Chr01:39377134..39377158 (25 bp)
ACTATGGAATGTTTGGTGCCCTTGC
LOC_Os01g67280
OsAffx.11769.2.S1_at--1102--10671Chr01:39377113..39377137 (25 bp)
TTGCCATCTTCCCTTATTTGACGAG
LOC_Os01g67280
OsAffx.11769.2.S1_at--955--8911Chr01:39377056..39377080 (25 bp)
TGAGCCCAAGCACATTCCATATTAT
LOC_Os01g67280
OsAffx.11769.2.S1_at--622--271Chr01:39377015..39377039 (25 bp)
ATATGTGTGGGCCTCGATGTACTTT
LOC_Os01g67280
OsAffx.11769.2.S1_at--791--5371Chr01:39376965..39376989 (25 bp)
GAAGAACATCCTTGCCTTCATCTTG
LOC_Os01g67280
OsAffx.11769.2.S1_at--519--431Chr01:39376946..39376970 (25 bp)
ATCTTGGCTTTCTATGCTCGAGCAT
LOC_Os01g67280
OsAffx.11769.2.S1_at--556--5931Chr01:39376927..39376951 (25 bp)
GAGCATCTGCTAGACTTGCAATCTT
LOC_Os01g67280
OsAffx.11769.2.S1_at--304--431Chr01:39376907..39376931 (25 bp)
ATCTTGGGCGTCTCACTGCTAGTGA
LOC_Os01g67280
OsAffx.11769.2.S1_at--648--6351Chr01:39376884..39376908 (25 bp)
GATCCTTTACAGTCACTTAGAGCTA
LOC_Os01g67280
OsAffx.11769.2.S1_at--197--7571Chr01:39376822..39376846 (25 bp)
GGGCCGCTACATGTATGCATTTACT
LOC_Os01g67280
OsAffx.11769.2.S1_at--556--6911Chr01:39376810..39376834 (25 bp)
GTATGCATTTACTCGTTTGGGCTAT
LOC_Os01g67280
Target Sequence 
ACTATGGAATGTTTGGTGCCCTTGCCATCTTCCCTTATTTGACGAGGACAGGCGGACTCAAGAGCGCATACTCCCCCTTG
AGCCCAAGCACATTCCATATTATTTTCTGTACATGGTGGATATGTGTGGGCCTCGATGTACTTTGTGGCAATAGAGGGAG
AGCCATGATGAAGAACATCCTTGCCTTCATCTTGGCTTTCTATGCTCGAGCATCTGCTAGACTTGCAATCTTGGGCGTCT
CACTGCTAGTGATCCTTTACAGTCACTTAGAGCTAGCTCCCAATGAAATCTACACACTGTACATCCTTTTGGGGGCCGCT
ACATGTATGCATTTACTCGTTTGGGCTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11769.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis