Browse Element(s) Details


Os.15943.1.S1_at

Description gb:AK106563.1
DB_XREF= gi:32991772
TID=Os.15943.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.15943 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) patatin-like protein (P0674H09.28), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-110-C08, full insert sequence.
FL= gb:AK106563.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6731011/11Patatin-like phospholipase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g67260OsAffx.23952.1.S1_at11/111+39367480..39368971hypothetical protein
LOC_Os01g67270OsAffx.23953.1.S1_at8/111+39373991..39374761expressed protein
LOC_Os01g67280OsAffx.11769.1.S1_s_at11/111+39376689..39378379hypothetical protein
LOC_Os01g67280OsAffx.11769.2.S1_at11/111+39376689..39378379hypothetical protein
LOC_Os01g67290Os.10859.1.S1_a_at11/111+39379134..39385378cyclin, putative, expressed
LOC_Os01g67300OsAffx.23954.1.S1_at11/111+39390294..39392106expressed protein
LOC_Os01g67300Os.16281.1.A1_s_at3/111+39390294..39392106expressed protein
LOC_Os01g67310Os.15943.1.S1_at11/111+39393026..39395480Patatin-like phospholipase family protein, expressed
LOC_Os01g67314Os.36852.1.S1_at11/111+39396981..39399517expressed protein
LOC_Os01g67320OsAffx.11770.1.S1_at9/111+39405405..39408990expressed protein
LOC_Os01g67330Os.39420.1.S1_at11/111+39411930..39417878nucleotide-sugar transporter family protein, putative, expressed
LOC_Os01g67330Os.39420.2.S1_at11/111+39411930..39417878nucleotide-sugar transporter family protein, putative, expressed
LOC_Os01g67330Os.39420.2.S1_x_at10/111+39411930..39417878nucleotide-sugar transporter family protein, putative, expressed
LOC_Os01g67340Os.12116.1.S1_at11/111+39418583..39422180Protein kinase domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0045735molecular_functionnutrient reservoir activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.15943.1.S1_at--380--5051Chr01:39394762..39394786 (25 bp)
GCAGACCTCTTTCAAGCAATCGGAT
LOC_Os01g67310
Os.15943.1.S1_at--715--7991Chr01:39394783..39394807 (25 bp)
GGATGTTCACACCAACTATTGCGCA
LOC_Os01g67310
Os.15943.1.S1_at--348--3111Chr01:39394956..39394980 (25 bp)
AATATCCAATGACCTCTCGACGAAG
LOC_Os01g67310
Os.15943.1.S1_at--642--2911Chr01:39394978..39395002 (25 bp)
AAGGATCATCTTCAACTGTTGGTTA
LOC_Os01g67310
Os.15943.1.S1_at--873--5851Chr01:39395065..39395089 (25 bp)
GAGCCAGAGCCAAACCTTCATGGTG
LOC_Os01g67310
Os.15943.1.S1_at--856--7751Chr01:39395086..39395110 (25 bp)
GGTGACCATGTGACGACCTATGCAG
LOC_Os01g67310
Os.15943.1.S1_at--1076--5031Chr01:39395107..39395131 (25 bp)
GCAGATATGCTCACACGGTTTGCAA
LOC_Os01g67310
Os.15943.1.S1_at--445--8191Chr01:39395150..39395174 (25 bp)
GGAAGCTAAGGCTCCACAACATGAA
LOC_Os01g67310
Os.15943.1.S1_at--140--671Chr01:39395170..39395194 (25 bp)
ATGAAGCTGGATGCTAAGCCCTAGC
LOC_Os01g67310
Os.15943.1.S1_at--769--9591Chr01:39395235..39395259 (25 bp)
TCATCTATAGGATTGCGTGTCCCCT
LOC_Os01g67310
Os.15943.1.S1_at--1046--7451Chr01:39395251..39395275 (25 bp)
GTGTCCCCTACTAAGCCAATTAATT
LOC_Os01g67310
Target Sequence 
GCAGACCTCTTTCAAGCAATCGGATGTTCACACCAACTATTGCGCATTCAGGATCACAACATCCCAATAGGGGCAATATC
CAATGACCTCTCGACGAAGGATCATCTTCAACTGTTGGTTAAGATAGGCGAAAACCTTCTCAAGAAGCCACTAAGCAAGG
AAGAGTGTGAGAAGAACAACATTGAGCCAGAGCCAAACCTTCATGGTGACCATGTGACGACCTATGCAGATATGCTCACA
CGGTTTGCAAAGCTACTTTCAGACGAGAGGAAGCTAAGGCTCCACAACATGAAGCTGGATGCTAAGCCCTAGCACAATTG
AAACGTGAGATCCTTGGAACAGATGTCTCATGTTCATCTATAGGATTGCGTGTCCCCTACTAAGCCAATTAATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.15943.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis