Browse Element(s) Details


OsAffx.23954.1.S1_at

Description tigr:9629.m06685
TID=OsAffx.23954.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6730011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g67260OsAffx.23952.1.S1_at11/111+39367480..39368971hypothetical protein
LOC_Os01g67270OsAffx.23953.1.S1_at8/111+39373991..39374761expressed protein
LOC_Os01g67280OsAffx.11769.1.S1_s_at11/111+39376689..39378379hypothetical protein
LOC_Os01g67280OsAffx.11769.2.S1_at11/111+39376689..39378379hypothetical protein
LOC_Os01g67290Os.10859.1.S1_a_at11/111+39379134..39385378cyclin, putative, expressed
LOC_Os01g67300OsAffx.23954.1.S1_at11/111+39390294..39392106expressed protein
LOC_Os01g67300Os.16281.1.A1_s_at3/111+39390294..39392106expressed protein
LOC_Os01g67310Os.15943.1.S1_at11/111+39393026..39395480Patatin-like phospholipase family protein, expressed
LOC_Os01g67314Os.36852.1.S1_at11/111+39396981..39399517expressed protein
LOC_Os01g67320OsAffx.11770.1.S1_at9/111+39405405..39408990expressed protein
LOC_Os01g67330Os.39420.1.S1_at11/111+39411930..39417878nucleotide-sugar transporter family protein, putative, expressed
LOC_Os01g67330Os.39420.2.S1_at11/111+39411930..39417878nucleotide-sugar transporter family protein, putative, expressed
LOC_Os01g67330Os.39420.2.S1_x_at10/111+39411930..39417878nucleotide-sugar transporter family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23954.1.S1_at--256--2531Chr01:39390923..39390947 (25 bp)
AACTGCCAGTTTTACTGGGAACGAT
LOC_Os01g67300
OsAffx.23954.1.S1_at--382--8651Chr01:39390938..39390962 (25 bp)
TGGGAACGATATGCAGAAACTGCTC
LOC_Os01g67300
OsAffx.23954.1.S1_at--354--5531Chr01:39390953..39390977 (25 bp)
GAAACTGCTCAGTGATAAGCTGGAA
LOC_Os01g67300
OsAffx.23954.1.S1_at--572--9791Chr01:39390968..39391112 (25 bp)
TAAGCTGGAAGAGCGCATACAGAAG
LOC_Os01g67300
OsAffx.23954.1.S1_at--549--7631Chr01:39391131..39391155 (25 bp)
GGGACGATGCAACTCTCCATGGACA
LOC_Os01g67300
OsAffx.23954.1.S1_at--999--651Chr01:39391137..39391161 (25 bp)
ATGCAACTCTCCATGGACAGTCTTT
LOC_Os01g67300
OsAffx.23954.1.S1_at--1121--831Chr01:39391149..39391173 (25 bp)
ATGGACAGTCTTTACCGCATCGATG
LOC_Os01g67300
OsAffx.23954.1.S1_at--862--10331Chr01:39391159..39391183 (25 bp)
TTTACCGCATCGATGCGCATTCAAA
LOC_Os01g67300
OsAffx.23954.1.S1_at--15--2431Chr01:39391602..39391626 (25 bp)
AAAACAGAACTGGATCTTGATACAG
LOC_Os01g67300
OsAffx.23954.1.S1_at--1055--2751Chr01:39391658..39392019 (25 bp)
AAGACTAGGTGAACACAACGCCAAT
LOC_Os01g67300
OsAffx.23954.1.S1_at--9--5511Chr01:39392005..39392029 (25 bp)
GAACACAACGCCAATCATGTTCTTT
LOC_Os01g67300
Target Sequence 
AACTGCCAGTTTTACTGGGAACGATATGCAGAAACTGCTCAGTGATAAGCTGGAAGAGCGCATACAGAAGAAGGTGGAGA
AGGCAATGGGGACGATGCAACTCTCCATGGACAGTCTTTACCGCATCGATGCGCATTCAAAGGCATGCATGGTGGATCCT
GAAGATAAAACAGAACTGGATCTTGATACAGAATTTCTTCCTCCAATGTCATACTTAAGCTCAAGACTAGGTGAACACAA
CGCCAATCATGTTCTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23954.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis