Browse Element(s) Details


OsAffx.11771.1.S1_at

Description tigr:9629.m06692
TID=OsAffx.11771.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6735011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g67320OsAffx.11770.1.S1_at9/111+39405405..39408990expressed protein
LOC_Os01g67330Os.39420.1.S1_at11/111+39411930..39417878nucleotide-sugar transporter family protein, putative, expressed
LOC_Os01g67330Os.39420.2.S1_at11/111+39411930..39417878nucleotide-sugar transporter family protein, putative, expressed
LOC_Os01g67330Os.39420.2.S1_x_at10/111+39411930..39417878nucleotide-sugar transporter family protein, putative, expressed
LOC_Os01g67340Os.12116.1.S1_at11/111+39418583..39422180Protein kinase domain containing protein, expressed
LOC_Os01g67350OsAffx.11771.1.S1_at11/111+39425858..39428613expressed protein
LOC_Os01g67350Os.39110.1.S1_s_at11/111+39425858..39428613expressed protein
LOC_Os01g67360Os.30516.1.S1_at11/111+39429126..39432613methyltransferase family protein, expressed
LOC_Os01g67364OsAffx.32292.1.A1_at7/111+39441530..39444085hypothetical protein
LOC_Os01g67364OsAffx.30475.4.S1_at3/111+39441530..39444085hypothetical protein
LOC_Os01g67364OsAffx.32280.1.S1_at1/111+39441530..39444085hypothetical protein
LOC_Os01g67364OsAffx.32228.1.A1_x_at1/111+39441530..39444085hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006508biological_processproteolysis
GO:0008234molecular_functioncysteine-type peptidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11771.1.S1_at--754--991Chr01:39428235..39428259 (25 bp)
AGGTGAAAAAATATGGTTGCTGCAA
LOC_Os01g67350
OsAffx.11771.1.S1_at--429--3111Chr01:39428244..39428268 (25 bp)
AATATGGTTGCTGCAAATGCACACT
LOC_Os01g67350
OsAffx.11771.1.S1_at--554--7911Chr01:39428249..39428273 (25 bp)
GGTTGCTGCAAATGCACACTAGGTA
LOC_Os01g67350
OsAffx.11771.1.S1_at--592--4752Chr01:39428253..39428277 (25 bp)
GCTGCAAATGCACACTAGGTACAAA
LOC_Os01g67350
OsAffx.11771.1.S1_at--866--9011Chr01:39428261..39428285 (25 bp)
TGCACACTAGGTACAAACAAATTTG
LOC_Os01g67350
OsAffx.11771.1.S1_at--414--2471Chr01:39428276..39428300 (25 bp)
AACAAATTTGCGGATCTCACTGTGG
LOC_Os01g67350
OsAffx.11771.1.S1_at--940--3291Chr01:39428278..39428302 (25 bp)
CAAATTTGCGGATCTCACTGTGGAG
LOC_Os01g67350
OsAffx.11771.1.S1_at--218--211Chr01:39428281..39428305 (25 bp)
ATTTGCGGATCTCACTGTGGAGGAA
LOC_Os01g67350
OsAffx.11771.1.S1_at--1122--6411Chr01:39428288..39428312 (25 bp)
GATCTCACTGTGGAGGAAGTCTCGA
LOC_Os01g67350
OsAffx.11771.1.S1_at--62--3751Chr01:39428291..39428315 (25 bp)
CTCACTGTGGAGGAAGTCTCGAACA
LOC_Os01g67350
OsAffx.11771.1.S1_at--121--3871Chr01:39428295..39428319 (25 bp)
CTGTGGAGGAAGTCTCGAACAAGTT
LOC_Os01g67350
Target Sequence 
AGGTGAAAAAATATGGTTGCTGCAAATGCACACTAGGTACAAACAAATTTGCGGATCTCACTGTGGAGGAAGTCTCGAAC
AAGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11771.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis