Browse Element(s) Details


Os.39131.1.A1_at

Description gb:CF280306
DB_XREF= gi:33657692
DB_XREF=14ETL--06-O18.g1
CLONE=14ETL--06-O18
TID=Os.39131.1
CNT=1
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.39131 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein pir:T49025 (A.thaliana) T49025 carbonate dehydratase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3303011/11Eukaryotic-type carbonic anhydrase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g32990NANA2+19608212..19609204expressed protein
LOC_Os02g33000Os.53440.1.S1_at10/112+19613375..19617976Glycosyl hydrolases family 17 protein, expressed
LOC_Os02g33010Os.7691.1.S1_s_at11/112+19617191..19622802expressed protein
LOC_Os02g33020OsAffx.24550.1.S1_at10/112+19626566..19629199SOUL heme-binding protein, expressed
LOC_Os02g33020Os.57395.1.S1_at1/112+19626566..19629199SOUL heme-binding protein, expressed
LOC_Os02g33030Os.39131.1.A1_at11/112+19630403..19632981Eukaryotic-type carbonic anhydrase family protein, expressed
LOC_Os02g33030OsAffx.12324.1.S1_at11/112+19630403..19632981Eukaryotic-type carbonic anhydrase family protein, expressed
LOC_Os02g33040OsAffx.12325.1.S1_at11/112+19636332..19636992hypothetical protein
LOC_Os02g33050NANA2+19637781..19638326hypothetical protein
LOC_Os02g33060Os.9930.1.S1_at11/112+19639144..19640211expressed protein
LOC_Os02g33060OsAffx.12326.1.S1_at11/112+19639144..19640211expressed protein
LOC_Os02g33070Os.9283.1.S1_at2/112+19643061..19643496hypothetical protein
LOC_Os02g33080Os.4756.1.S1_at11/112+19644045..19647588hydrolase, carbon-nitrogen family protein, expressed
LOC_Os02g33090OsAffx.2837.1.S1_at11/112+19648050..19648574expressed protein
LOC_Os02g33090OsAffx.2837.1.S1_x_at11/112+19648050..19648574expressed protein
LOC_Os02g33100OsAffx.12327.1.S1_at11/112+19654414..19654755hypothetical protein
LOC_Os02g33100OsAffx.12327.1.S1_x_at11/112+19654414..19654755hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006730biological_processone-carbon compound metabolism
GO:0004089molecular_functioncarbonate dehydratase activity
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.39131.1.A1_at--941--3171Chr02:19632820..19632844 (25 bp)
CAATTACATGTAACCCCATAACGGT
LOC_Os02g33030
Os.39131.1.A1_at--213--3431Chr02:19632826..19632850 (25 bp)
CATGTAACCCCATAACGGTAATCCA
LOC_Os02g33030
Os.39131.1.A1_at--551--2571Chr02:19632839..19632863 (25 bp)
AACGGTAATCCAAAAGATGCTTTAT
LOC_Os02g33030
Os.39131.1.A1_at--855--2331Chr02:19632851..19632875 (25 bp)
AAAGATGCTTTATCCTGCGGCAGCT
LOC_Os02g33030
Os.39131.1.A1_at--944--9131Chr02:19632866..19632890 (25 bp)
TGCGGCAGCTCATCTATCTGCAGAT
LOC_Os02g33030
Os.39131.1.A1_at--844--5051Chr02:19632870..19632894 (25 bp)
GCAGCTCATCTATCTGCAGATAATA
LOC_Os02g33030
Os.39131.1.A1_at--1123--351Chr02:19632892..19632916 (25 bp)
ATAATGTGCTTTAGTATGTACCCAA
LOC_Os02g33030
Os.39131.1.A1_at--508--4871Chr02:19632899..19632923 (25 bp)
GCTTTAGTATGTACCCAAGTTCAGG
LOC_Os02g33030
Os.39131.1.A1_at--689--631Chr02:19632907..19632931 (25 bp)
ATGTACCCAAGTTCAGGAATGTCAA
LOC_Os02g33030
Os.39131.1.A1_at--247--8211Chr02:19632922..19632946 (25 bp)
GGAATGTCAATGTAATCGGCGCCAT
LOC_Os02g33030
Os.39131.1.A1_at--949--8731Chr02:19632926..19632950 (25 bp)
TGTCAATGTAATCGGCGCCATGGAC
LOC_Os02g33030
Target Sequence 
CAATTACATGTAACCCCATAACGGTAATCCAAAAGATGCTTTATCCTGCGGCAGCTCATCTATCTGCAGATAATAATGTG
CTTTAGTATGTACCCAAGTTCAGGAATGTCAATGTAATCGGCGCCATGGAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.39131.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis