Browse Element(s) Details


Os.39421.1.S1_at

Description gb:CF333263
DB_XREF= gi:33814804
DB_XREF=JMT--02-B12.b1
CLONE=JMT--02-B12
TID=Os.39421.1
CNT=7
FEA=EST
TIER=ConsEnd
STK=2
UG=Os.39421 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequences
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g455509/11expressed protein
LOC_Os06g423705/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os09g273105/11hypothetical protein
LOC_Os02g587805/11retrotransposon protein, putative, unclassified
LOC_Os10g091303/11hypothetical protein
LOC_Os02g587503/11hypothetical protein
LOC_Os01g067102/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g45510OsAffx.2218.2.S1_s_at11/1111+27046748..27048718expressed protein
LOC_Os11g45520OsAffx.31493.1.S1_at10/1111+27054854..27056116hypothetical protein
LOC_Os11g45530OsAffx.19392.1.S1_at10/1111+27056481..27060656transposon protein, putative, unclassified
LOC_Os11g45540OsAffx.719.4.S1_at10/1111+27064276..27067306Protein kinase domain containing protein, expressed
LOC_Os11g45540OsAffx.719.1.S1_s_at8/1111+27064276..27067306Protein kinase domain containing protein, expressed
LOC_Os11g45550Os.39421.1.S1_at9/1111+27068232..27069221expressed protein
LOC_Os11g45550OsAffx.20967.1.S1_x_at1/1111+27068232..27069221expressed protein
LOC_Os11g45560OsAffx.31494.1.S1_at11/1111+27069869..27072475BTB/POZ domain containing protein
LOC_Os11g45570OsAffx.31495.1.S1_at11/1111+27075411..27075842hypothetical protein
LOC_Os11g45580OsAffx.31496.1.S1_at11/1111+27077205..27082227hypothetical protein
LOC_Os11g45590Os.17168.1.A1_at11/1111+27084173..27089421transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os11g45600OsAffx.31497.1.S1_at11/1111+27090023..27091090rust resistance protein Rp1-dp8, putative
LOC_Os11g45610NANA11+27091497..27096307retrotransposon protein, putative, unclassified, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016789molecular_functioncarboxylic ester hydrolase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.39421.1.S1_at--1132--7171Chr11:27069295..27069319 (25 bp)
GTCTGTTCGAGCTGACGCTGTGCTA
NONE
Os.39421.1.S1_at--1074--5711Chr11:27069260..27069284 (25 bp)
GACTCGACGCTGCTAATTCAAGCTG
NONE
Os.39421.1.S1_at--321--9311Chr11:27069061..27069085 (25 bp)
TCCCATGCCGGAGGTCAAGTATCAC
LOC_Os11g45550
Os.39421.1.S1_at--762--3357Chr06:25466102..25466126 (25 bp)
CACGCATGGCGTCGAAACCAGCGGA
LOC_Os06g42370
Os.39421.1.S1_at--871--8237Chr11:27068941..27068965 (25 bp)
GGCAACAAGCTAGCTAATGCATGTT
LOC_Os11g45550
Os.39421.1.S1_at--1100--10218Chr06:25466230..25466254 (25 bp)
TATTGTGGCAACGTGGCCAACCAAT
LOC_Os06g42370
Os.39421.1.S1_at--190--7537Chr06:25466242..25466266 (25 bp)
GTGGCCAACCAATCGGAGGACGACA
LOC_Os06g42370
Os.39421.1.S1_at--635--8111Chr11:27068875..27068899 (25 bp)
GGACGACATGTCATCACTGCTACAG
LOC_Os11g45550
Os.39421.1.S1_at--207--7299Chr06:25466283..25466307 (25 bp)
GTGCCATGCACAAACCAATGCGTGG
LOC_Os06g42370
Os.39421.1.S1_at--744--612Chr06:25466300..25466324 (25 bp)
ATGCGTGGGCTGAAGAAGTCCTATT
LOC_Os06g42370
Os.39421.1.S1_at--964--8551Chr11:27068810..27068834 (25 bp)
TGGTTTTTCTTATTCGTCCCAAATG
LOC_Os11g45550
Target Sequence 
GTCTGTTCGAGCTGACGCTGTGCTACTTGTCCCTGGACTCGACGCTGCTAATTCAAGCTGCTGGTGATGCATCTACCCGA
AGCTGCGACCTCGCCGAGATGCCGGACGTCCTTGATTTGCAAGCTTCACCGCACTGGAGCGGGCTAACCATGGAGGAGGT
CATCGGGAAGCCGCCCTGCCGGAGCGCGCCGAGGATCGCCGGAGCTGCCACCGACTGCCAAGATTTCTATCCATTCCCAT
GCCGGAGGTCAAGTATCACGCATGGCGTCGAAACCAGCGGATGACGATGGAGACAAGTATGGCTGCAGTACGAAGGAAGG
ACGACGGGAGGACGGCGAGCCAGTGCTGTTGGATGGCAACAAGCTAGCTAATGCATGTTGATTAAGTTAATTATTGTGGC
AACGTGGCCAACCAATCGGAGGACGACATGTCATCACTGCTACAGTGCCATGCACAAACCAATGCGTGGGCTGAAGAAGT
CCTATTGGTTTTTCTTATTCGTCCCAAATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.39421.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis