Browse Element(s) Details


Os.39859.1.S1_at

Description gb:CF318997
DB_XREF= gi:33690758
DB_XREF=HD--09-F13.b1
CLONE=HD--09-F13
TID=Os.39859.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.39859 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) OJ1612_A04.14 (OJ1612_A04.14), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3626011/11transposon protein, putative, Pong sub-class, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g36230Os.27111.1.S1_at11/117+21651560..21655665NPH3 family protein, expressed
LOC_Os07g36230OsAffx.8775.1.S1_at6/117+21651560..21655665NPH3 family protein, expressed
LOC_Os07g36240OsAffx.28775.1.S1_x_at11/117+21656307..21657052hypothetical protein
LOC_Os07g36240OsAffx.28775.2.S1_at7/117+21656307..21657052hypothetical protein
LOC_Os07g36250Os.9780.1.S1_at11/117+21666526..21670201Peptide chain release factor 2, putative, expressed
LOC_Os07g36260Os.39859.1.S1_at11/117+21673087..21675683transposon protein, putative, Pong sub-class, expressed
LOC_Os07g36270NANA7+21679126..21683366retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g36280OsAffx.28776.4.S1_at11/117+21690901..21693103F-box domain containing protein
LOC_Os07g36280OsAffx.28776.3.S1_x_at1/117+21690901..21693103F-box domain containing protein
LOC_Os07g36290OsAffx.28776.3.S1_x_at11/117+21699926..21703973F-box domain containing protein
LOC_Os07g36290OsAffx.28776.3.S1_at10/117+21699926..21703973F-box domain containing protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.39859.1.S1_at--153--3391Chr07:21674496..21674520 (25 bp)
CAGCGCTTGTTTTGACCCAGATGAA
LOC_Os07g36260
Os.39859.1.S1_at--427--7291Chr07:21674429..21674453 (25 bp)
GTGCCTGCTGATTCTTTTACTGAAG
LOC_Os07g36260
Os.39859.1.S1_at--238--6851Chr07:21674384..21674408 (25 bp)
GTTTGTGCTCCACCGAAACATACAC
LOC_Os07g36260
Os.39859.1.S1_at--796--5311Chr07:21673872..21673896 (25 bp)
GAAGGTCAAGGCTATCTGGCTTTAA
LOC_Os07g36260
Os.39859.1.S1_at--217--10491Chr07:21673851..21673875 (25 bp)
TTAACTACCACCAAACAGCTGTCAG
LOC_Os07g36260
Os.39859.1.S1_at--955--1211Chr07:21673792..21673816 (25 bp)
AGTTGCTCCCAACAAATCCTAGGTT
LOC_Os07g36260
Os.39859.1.S1_at--804--7871Chr07:21673656..21673795 (25 bp)
GGTTTTCAACAGAAGTCCTCAATCT
LOC_Os07g36260
Os.39859.1.S1_at--225--2831Chr07:21673607..21673631 (25 bp)
AAGTTAGCTCTTCGATACAGCTCCC
LOC_Os07g36260
Os.39859.1.S1_at--1023--331Chr07:21673593..21673617 (25 bp)
ATACAGCTCCCTGCAGTGAGTTGAT
LOC_Os07g36260
Os.39859.1.S1_at--269--6051Chr07:21673359..21673383 (25 bp)
GAGTGCTTAGGCAGGCTTTTCGTAT
LOC_Os07g36260
Os.39859.1.S1_at--960--911Chr07:21673347..21673371 (25 bp)
AGGCTTTTCGTATGCACCTTTTGAA
LOC_Os07g36260
Target Sequence 
CAGCGCTTGTTTTGACCCAGATGAAATTTCAGGGACATTGGCTGTTATTTTATCAGACATCAACACTGTGCCTGCTGATT
CTTTTACTGAAGTGCTACATAGAAATGCTTCTGTTTGTGCTCCACCGAAACATACACGACTTAGAAGGGACTTAATGGAG
CATATTTGGCAGCGATTTGGTCCATTTGGCAACCAGTAAAACAATTAATCCTAGTGTGGAAAAGTCAGTGAAGGTCAAGG
CTATCTGGCTTTAACTACCACCAAACAGCTGTCAGCATAAATTGCTACATTTTCAGAAAGACATTTTAAAGTTGCTCCCA
ACAAATCCTAGGTTTTCAACAGAAGTCCTCAATCTAGACTGGAAGTTGCTAATTTGTTAAAGTTAGCTCTTCGATACAGC
TCCCTGCAGTGAGTTGATCATGGTCATCTTTTTTCTATATATTACCAGGGAGTGCTTAGGCAGGCTTTTCGTATGCACCT
TTTGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.39859.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis