Browse Element(s) Details


OsAffx.28775.1.S1_x_at

Description gb:NM_185710.1
DB_XREF= gi:34898505
TID=OsAffx.28775.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) OJ1612_A04.9 (OJ1612_A04.9), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3624011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g36200Os.48958.1.S1_s_at4/117+21627777..21631409expressed protein
LOC_Os07g36210Os.52465.1.S1_at9/117+21632111..21634912expressed protein
LOC_Os07g36220Os.5139.2.S1_x_at1/117+21638888..21640543hypothetical protein
LOC_Os07g36230Os.27111.1.S1_at11/117+21651560..21655665NPH3 family protein, expressed
LOC_Os07g36230OsAffx.8775.1.S1_at6/117+21651560..21655665NPH3 family protein, expressed
LOC_Os07g36240OsAffx.28775.1.S1_x_at11/117+21656307..21657052hypothetical protein
LOC_Os07g36240OsAffx.28775.2.S1_at7/117+21656307..21657052hypothetical protein
LOC_Os07g36250Os.9780.1.S1_at11/117+21666526..21670201Peptide chain release factor 2, putative, expressed
LOC_Os07g36260Os.39859.1.S1_at11/117+21673087..21675683transposon protein, putative, Pong sub-class, expressed
LOC_Os07g36270NANA7+21679126..21683366retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28775.1.S1_x_at--803--5491Chr07:21656990..21657014 (25 bp)
GAACATGAAGAAACCATTGGCCGTA
LOC_Os07g36240
OsAffx.28775.1.S1_x_at--1074--11Chr07:21656975..21656999 (25 bp)
ATTGGCCGTAGACCACACCGAGCTG
LOC_Os07g36240
OsAffx.28775.1.S1_x_at--701--10031Chr07:21656967..21656991 (25 bp)
TAGACCACACCGAGCTGGCCATGGA
LOC_Os07g36240
OsAffx.28775.1.S1_x_at--1085--1771Chr07:21656959..21656983 (25 bp)
ACCGAGCTGGCCATGGACCCATGGT
LOC_Os07g36240
OsAffx.28775.1.S1_x_at--776--8671Chr07:21656848..21656872 (25 bp)
TGTGCTGTAAAGATCACCCAGCCTT
LOC_Os07g36240
OsAffx.28775.1.S1_x_at--720--1791Chr07:21656833..21656857 (25 bp)
ACCCAGCCTTTTTTGACCATTTGAG
LOC_Os07g36240
OsAffx.28775.1.S1_x_at--323--1691Chr07:21656829..21656853 (25 bp)
AGCCTTTTTTGACCATTTGAGTATG
LOC_Os07g36240
OsAffx.28775.1.S1_x_at--213--811Chr07:21656396..21656831 (25 bp)
ATGGTGATGACCTGTAAGTTGGATT
LOC_Os07g36240
OsAffx.28775.1.S1_x_at--286--6611Chr07:21656379..21656403 (25 bp)
GTTGGATTTGGATTTTAAACCTGTG
LOC_Os07g36240
OsAffx.28775.1.S1_x_at--531--6531Chr07:21656369..21656393 (25 bp)
GATTTTAAACCTGTGGTGAGCAAAA
LOC_Os07g36240
OsAffx.28775.1.S1_x_at--858--8131Chr07:21656337..21656361 (25 bp)
GGAAAGTTTTTGTCAGGCGCACCGA
LOC_Os07g36240
Target Sequence 
GAACATGAAGAAACCATTGGCCGTAGACCACACCGAGCTGGCCATGGACCCATGGTGGGACGGTGTGTGCTGTAAAGATC
ACCCAGCCTTTTTTGACCATTTGAGTATGGTGATGACCTGTAAGTTGGATTTGGATTTTAAACCTGTGGTGAGCAAAAAG
GAAATGGAAAGTTTTTGTCAGGCGCACCGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28775.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis