Browse Element(s) Details


Os.27111.1.S1_at

Description gb:AK069172.1
DB_XREF= gi:32979196
TID=Os.27111.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.27111 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) OJ1612_A04.8 (OJ1612_A04.8), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023004J07, full insert sequence.
FL= gb:AK069172.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3623011/11NPH3 family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g36190Os.2357.1.S1_at10/117+21623925..21627102Isopentenyl-diphosphate delta-isomerase I, putative, expressed
LOC_Os07g36200Os.48958.1.S1_s_at4/117+21627777..21631409expressed protein
LOC_Os07g36210Os.52465.1.S1_at9/117+21632111..21634912expressed protein
LOC_Os07g36220Os.5139.2.S1_x_at1/117+21638888..21640543hypothetical protein
LOC_Os07g36230Os.27111.1.S1_at11/117+21651560..21655665NPH3 family protein, expressed
LOC_Os07g36230OsAffx.8775.1.S1_at6/117+21651560..21655665NPH3 family protein, expressed
LOC_Os07g36240OsAffx.28775.1.S1_x_at11/117+21656307..21657052hypothetical protein
LOC_Os07g36240OsAffx.28775.2.S1_at7/117+21656307..21657052hypothetical protein
LOC_Os07g36250Os.9780.1.S1_at11/117+21666526..21670201Peptide chain release factor 2, putative, expressed
LOC_Os07g36260Os.39859.1.S1_at11/117+21673087..21675683transposon protein, putative, Pong sub-class, expressed
LOC_Os07g36270NANA7+21679126..21683366retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
GO:0009416biological_processresponse to light stimulus
GO:0004871molecular_functionsignal transducer activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27111.1.S1_at--700--5771Chr07:21655097..21655121 (25 bp)
GACGAACACCTGAGGCCGGTGTCCG
LOC_Os07g36230
Os.27111.1.S1_at--559--9371Chr07:21655203..21655227 (25 bp)
TCGACCTGTCGCTGGAGAGCCAGAA
LOC_Os07g36230
Os.27111.1.S1_at--956--1371Chr07:21655218..21655242 (25 bp)
AGAGCCAGAATCTCAGGTCGCTCCT
LOC_Os07g36230
Os.27111.1.S1_at--912--1031Chr07:21655232..21655256 (25 bp)
AGGTCGCTCCTCGACGGGATGCACT
LOC_Os07g36230
Os.27111.1.S1_at--476--8691Chr07:21655281..21655305 (25 bp)
TGTGCAGCCGGATGAAGACGCAGAT
LOC_Os07g36230
Os.27111.1.S1_at--990--9031Chr07:21655372..21655396 (25 bp)
TGCTTCAAGATCACTTCCCCGGATG
LOC_Os07g36230
Os.27111.1.S1_at--115--3971Chr07:21655391..21655415 (25 bp)
CGGATGTGTTCTTGAAGCTCGTTTC
LOC_Os07g36230
Os.27111.1.S1_at--1132--5391Chr07:21655404..21655428 (25 bp)
GAAGCTCGTTTCATACTGATTGTAC
LOC_Os07g36230
Os.27111.1.S1_at--1124--531Chr07:21655466..21655490 (25 bp)
ATCCCTGCATTCTTGCCCCTTTTTT
LOC_Os07g36230
Os.27111.1.S1_at--624--2451Chr07:21655583..21655607 (25 bp)
AAAATTGGGAGTGTCTGAACTCTGA
LOC_Os07g36230
Os.27111.1.S1_at--523--5472Chr08:25220281..25220397 (25 bp)
GAACTCTGAAGAACATGGCAATGCA
NONE
Target Sequence 
GACGAACACCTGAGGCCGGTGTCCGCGGCGAAGCACCGCGCCGGCGGCGAGGACCACGACGACCTCGTCGCCGCCGGCGG
CCAGGTCGTCCTGTACGCCGGGAGGCTCGACCTGTCGCTGGAGAGCCAGAATCTCAGGTCGCTCCTCGACGGGATGCACT
GGCGGGTGATGGAGCTCGAGAAGGTGTGCAGCCGGATGAAGACGCAGATGAGCAAGATGAAGGCGGCGAGGAGAGCCACC
GGAGGCGGCGGCGGCGCCGCCGCCGGCCGCCGCGCTGCTTCAAGATCACTTCCCCGGATGTGTTCTTGAAGCTCGTTTCA
TACTGATTGTACATAGGAGTAGCAGCAAATGCAGAGATGTGGTTNTTTCATCCCTGCATTCTTGCCCCTTTTTTTTCTCT
TCATTTTTTTTCTCAATTTTTTTCCATATGTGTATTATGATGATGCATCAGTTNTTGGTCACTGGAGAGAAGAGNTAGTA
GNTGTGAAAATTGGGAGTGTCTGAACTCTGAAGAACATGGCAATGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27111.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis