Browse Element(s) Details


Os.2357.1.S1_at

Description gb:AK065871.1
DB_XREF= gi:32975889
TID=Os.2357.1
CNT=23
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.2357 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative isopentenyl pyrophosphate:dimethyllallyl pyrophosphate isomerase (OJ1612_A04.1), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013044J20, full insert sequence.
FL= gb:AK065871.1 gb:AK061800.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3619010/11Isopentenyl-diphosphate delta-isomerase I, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g36150Os.52829.1.S1_at11/117+21593104..21599029Formin Homology 2 Domain containing protein, expressed
LOC_Os07g36160NANA7+21604384..21604614hypothetical protein
LOC_Os07g36170Os.11766.1.S1_at11/117+21613259..21618622Chitin-inducible gibberellin-responsive protein 1, putative, expressed
LOC_Os07g36180OsAffx.16581.1.S1_at11/117+21619770..21622727pentatricopeptide, putative, expressed
LOC_Os07g36180Os.15739.1.S1_s_at11/117+21619770..21622727pentatricopeptide, putative, expressed
LOC_Os07g36180Os.14454.1.A1_at1/117+21619770..21622727pentatricopeptide, putative, expressed
LOC_Os07g36190Os.2357.1.S1_at10/117+21623925..21627102Isopentenyl-diphosphate delta-isomerase I, putative, expressed
LOC_Os07g36200Os.48958.1.S1_s_at4/117+21627777..21631409expressed protein
LOC_Os07g36210Os.52465.1.S1_at9/117+21632111..21634912expressed protein
LOC_Os07g36220Os.5139.2.S1_x_at1/117+21638888..21640543hypothetical protein
LOC_Os07g36230Os.27111.1.S1_at11/117+21651560..21655665NPH3 family protein, expressed
LOC_Os07g36230OsAffx.8775.1.S1_at6/117+21651560..21655665NPH3 family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0008299biological_processisoprenoid biosynthesis
GO:0015995biological_processchlorophyll biosynthesis
GO:0004452molecular_functionisopentenyl-diphosphate delta-isomerase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.2357.1.S1_at--750--8971Chr07:21626309..21626552 (25 bp)
TGAACACGAGCTTGACTACCTGCTG
LOC_Os07g36190
Os.2357.1.S1_at--985--7231Chr07:21626559..21626583 (25 bp)
GTCCGCGACGTGAAGGTAGTCCCGA
LOC_Os07g36190
Os.2357.1.S1_at--98--9011Chr07:21626629..21626653 (25 bp)
TGAAGGAGCTCATCCGCAAAGCGGA
LOC_Os07g36190
Os.2357.1.S1_at--90--2951Chr07:21626665..21626689 (25 bp)
AAGGCCTGAAGCTGTCTCCCTGGTT
LOC_Os07g36190
Os.2357.1.S1_at--232--6451Chr07:21626727..21626751 (25 bp)
GATCACGTCGAGAAAGGCACCCTCA
LOC_Os07g36190
Os.2357.1.S1_at--878--8051Chr07:21626768..21626792 (25 bp)
GGAGACCATCCACAAGCTGAAGTAA
LOC_Os07g36190
Os.2357.1.S1_at--455--8991Chr07:21626826..21626850 (25 bp)
TGAAGACTCTGTTCTTGTGCTGCTG
LOC_Os07g36190
Os.2357.1.S1_at--864--4771Chr07:21626844..21626868 (25 bp)
GCTGCTGCATATTACTCTTACCAGG
LOC_Os07g36190
Os.2357.1.S1_at--646--3611Chr07:21626917..21626941 (25 bp)
CTTGGAAGTGTTGGGCTCTGCTGAC
LOC_Os07g36190
Os.2357.1.S1_at--994--3811Chr07:21626934..21626958 (25 bp)
CTGCTGACTGAGAGATTCCCTTATA
LOC_Os07g36190
Os.2357.1.S1_at--529--4311NONE
CCATTCCCTCGTAAGCTTTGATTAA
NONE
Target Sequence 
TGAACACGAGCTTGACTACCTGCTGTTCATCGTCCGCGACGTGAAGGTAGTCCCGAACCCGGACGAAGTGGCCGATGTGA
AATACGTGAGCCGTGAGCAGCTGAAGGAGCTCATCCGCAAAGCGGACGCCGGAGAGGAAGGCCTGAAGCTGTCTCCCTGG
TTCCGGCTGGTTGTTGACAACTTCCTCATGGGCTGGTGGGATCACGTCGAGAAAGGCACCCTCAACGAGGCCGTGGACAT
GGAGACCATCCACAAGCTGAAGTAAGGACTGCGATGTTGTGGCTGGAAAGAATGATCCTGAAGACTCTGTTCTTGTGCTG
CTGCATATTACTCTTACCAGGGAAGTTGCAGAAGTCAGAAGAAGCTTTTGTATGTTTCTGGGTTTGGAGCTTGGAAGTGT
TGGGCTCTGCTGACTGAGAGATTCCCTTATAGAGTGTCTATGTTAATTTAGCAAACTTCTATATTATACATGATTAGTTA
ATTGTTCGGTGTCTGAATAAAGAACAATAGCATGTTCCATGTTTATTTGCTACATATATGATGATGATGATGCCATTCCC
TCGTAAGCTTTGATTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.2357.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis