Browse Element(s) Details


OsAffx.16581.1.S1_at

Description tigr:9635.m03576
TID=OsAffx.16581.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3618011/11pentatricopeptide, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g36150Os.52829.1.S1_at11/117+21593104..21599029Formin Homology 2 Domain containing protein, expressed
LOC_Os07g36160NANA7+21604384..21604614hypothetical protein
LOC_Os07g36170Os.11766.1.S1_at11/117+21613259..21618622Chitin-inducible gibberellin-responsive protein 1, putative, expressed
LOC_Os07g36180OsAffx.16581.1.S1_at11/117+21619770..21622727pentatricopeptide, putative, expressed
LOC_Os07g36180Os.15739.1.S1_s_at11/117+21619770..21622727pentatricopeptide, putative, expressed
LOC_Os07g36180Os.14454.1.A1_at1/117+21619770..21622727pentatricopeptide, putative, expressed
LOC_Os07g36190Os.2357.1.S1_at10/117+21623925..21627102Isopentenyl-diphosphate delta-isomerase I, putative, expressed
LOC_Os07g36200Os.48958.1.S1_s_at4/117+21627777..21631409expressed protein
LOC_Os07g36210Os.52465.1.S1_at9/117+21632111..21634912expressed protein
LOC_Os07g36220Os.5139.2.S1_x_at1/117+21638888..21640543hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16581.1.S1_at--400--9591Chr07:21621862..21621886 (25 bp)
TCATACACGTTCAGTACCCAAGAGG
LOC_Os07g36180
OsAffx.16581.1.S1_at--221--2131Chr07:21621866..21621890 (25 bp)
ACACGTTCAGTACCCAAGAGGTTGT
LOC_Os07g36180
OsAffx.16581.1.S1_at--1159--4371Chr07:21621879..21621903 (25 bp)
CCAAGAGGTTGTTTTCCCGGATGAT
LOC_Os07g36180
OsAffx.16581.1.S1_at--959--1311Chr07:21621882..21621906 (25 bp)
AGAGGTTGTTTTCCCGGATGATCCT
LOC_Os07g36180
OsAffx.16581.1.S1_at--978--6631Chr07:21621886..21621910 (25 bp)
GTTGTTTTCCCGGATGATCCTGATA
LOC_Os07g36180
OsAffx.16581.1.S1_at--786--711Chr07:21621899..21621923 (25 bp)
ATGATCCTGATATATGACACCCGCC
LOC_Os07g36180
OsAffx.16581.1.S1_at--743--8831Chr07:21621906..21621930 (25 bp)
TGATATATGACACCCGCCATTGTCC
LOC_Os07g36180
OsAffx.16581.1.S1_at--1090--1791Chr07:21621917..21621941 (25 bp)
ACCCGCCATTGTCCAGACAAGGTTT
LOC_Os07g36180
OsAffx.16581.1.S1_at--1082--4431Chr07:21621921..21621945 (25 bp)
GCCATTGTCCAGACAAGGTTTTGGA
LOC_Os07g36180
OsAffx.16581.1.S1_at--970--1411Chr07:21622295..21622319 (25 bp)
AGAAAAGATTGTCCTCGAGAAATAC
LOC_Os07g36180
OsAffx.16581.1.S1_at--48--3231Chr07:21622331..21622355 (25 bp)
CAAGTACATGCATTTCAATGGTGAG
LOC_Os07g36180
Target Sequence 
TCATACACGTTCAGTACCCAAGAGGTTGTTTTCCCGGATGATCCTGATATATGACACCCGCCATTGTCCAGACAAGGTTT
TGGAGGTGATATATGCTGACATGGAGGAGCTAGGGGTGCATCCAGACGAGGATACAACAAGAAGGATCGGAAGAGCATTT
GTGACTTTAGGCCAGGAAGATAAAGAAAAGATTGTCCTCGAGAAATACTTGAAGAAGTACAAGTACATGCATTTCAATGG
TGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16581.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis