Browse Element(s) Details


Os.15739.1.S1_s_at

Description gb:CR290805
DB_XREF= gi:44677371
DB_XREF=CR290805
CLONE=p719b07p3
TID=Os.15739.1
CNT=3
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.15739 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_567571.1 (A.thaliana) putative protein (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3618011/11pentatricopeptide, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g36150Os.52829.1.S1_at11/117+21593104..21599029Formin Homology 2 Domain containing protein, expressed
LOC_Os07g36160NANA7+21604384..21604614hypothetical protein
LOC_Os07g36170Os.11766.1.S1_at11/117+21613259..21618622Chitin-inducible gibberellin-responsive protein 1, putative, expressed
LOC_Os07g36180OsAffx.16581.1.S1_at11/117+21619770..21622727pentatricopeptide, putative, expressed
LOC_Os07g36180Os.15739.1.S1_s_at11/117+21619770..21622727pentatricopeptide, putative, expressed
LOC_Os07g36180Os.14454.1.A1_at1/117+21619770..21622727pentatricopeptide, putative, expressed
LOC_Os07g36190Os.2357.1.S1_at10/117+21623925..21627102Isopentenyl-diphosphate delta-isomerase I, putative, expressed
LOC_Os07g36200Os.48958.1.S1_s_at4/117+21627777..21631409expressed protein
LOC_Os07g36210Os.52465.1.S1_at9/117+21632111..21634912expressed protein
LOC_Os07g36220Os.5139.2.S1_x_at1/117+21638888..21640543hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.15739.1.S1_s_at--650--5911Chr07:21622264..21622288 (25 bp)
GAGCATTTGTGACTTTAGGCCAGGA
LOC_Os07g36180
Os.15739.1.S1_s_at--220--191Chr07:21622342..21622366 (25 bp)
ATTTCAATGGTGAGCGCGTTCGGGT
LOC_Os07g36180
Os.15739.1.S1_s_at--545--111Chr07:21622397..21622421 (25 bp)
ATTCTCCCAATGTCAACGCTTGAAG
LOC_Os07g36180
Os.15739.1.S1_s_at--214--8991Chr07:21622417..21622441 (25 bp)
TGAAGCCTTGAACCATGTAATGATG
LOC_Os07g36180
Os.15739.1.S1_s_at--906--5991Chr07:21622441..21622465 (25 bp)
GAGACGACCTAGAAGGACACACCTT
LOC_Os07g36180
Os.15739.1.S1_s_at--390--5631Chr07:21622456..21622480 (25 bp)
GACACACCTTCAATGTATTTAGCAG
LOC_Os07g36180
Os.15739.1.S1_s_at--2--191Chr07:21622472..21622496 (25 bp)
ATTTAGCAGTTACTGACCCTGGTCC
LOC_Os07g36180
Os.15739.1.S1_s_at--492--1811Chr07:21622487..21622511 (25 bp)
ACCCTGGTCCTTTGTGATTACTGTC
LOC_Os07g36180
Os.15739.1.S1_s_at--267--151Chr07:21622503..21622527 (25 bp)
ATTACTGTCTTTCCTGAGGCTGTAC
LOC_Os07g36180
Os.15739.1.S1_s_at--941--191Chr07:21622532..21622556 (25 bp)
ATTTCTGTCGTTCCTCTTATGTGAA
LOC_Os07g36180
Os.15739.1.S1_s_at--866--2791Chr07:21622667..21622691 (25 bp)
AAGATGTGATTCTCCAATGGGTATT
LOC_Os07g36180
Target Sequence 
GAGCATTTGTGACTTTAGGCCAGGAAGATAAAGNAAAGATTGTCCNTCGAGAAATACTTGAAGAAGTACAAGTACNTGNC
ATTTCAATGGTGAGCGCGTTCGGGTGCGAAGGGGAGGNCCTTTGACATAGTAAGCATTCTCCCAATGTCAACGCTTGAAG
CCTTGAACCATGTAATGATGAGACGACCTAGAAGGACACACCTTCAATGTATTTAGCAGTTACTGACCCTGGTCCTTTGT
GATTACTGTCTTTCCTGAGGCTGTACAAAGATTTCTGTCGTTCCTCTTATGTGAAAGCATGGTTAGATTGTACTGCTTTG
TAGGCAAATGAACAGTGGACTCAATACAGTTACTAACTAGATACTGGNTTAGTTAATGGAAAGCATTGTGATGCTCCAAA
CAAGTAAGATGTGATTCTCCAATGGGTATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.15739.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis