Browse Element(s) Details


Os.52829.1.S1_at

Description gb:AK103512.1
DB_XREF= gi:32988721
TID=Os.52829.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52829 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033131F22, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033131F22, full insert sequence.
FL= gb:AK069473.1 gb:AK103512.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3615011/11Formin Homology 2 Domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g36080Os.11078.1.S1_a_at11/117+21572752..21574339Oxygen-evolving enhancer protein 3-1, chloroplast precursor, putative, expressed
LOC_Os07g36090Os.52996.1.S1_at11/117+21574541..21577636ribosomal protein L28 containing protein, expressed
LOC_Os07g36100NANA7+21578258..21579010transposon protein, putative, unclassified
LOC_Os07g36110Os.54499.1.S1_at11/117+21581163..21582268expressed protein
LOC_Os07g36120OsAffx.28774.1.S1_at10/117+21585408..21587564hypothetical protein
LOC_Os07g36130Os.13874.4.S1_at8/117+21588126..21589281Histone H2A, putative, expressed
LOC_Os07g36140Os.12592.1.S1_at11/117+21590798..21591895Histone H2A, putative, expressed
LOC_Os07g36150Os.52829.1.S1_at11/117+21593104..21599029Formin Homology 2 Domain containing protein, expressed
LOC_Os07g36160NANA7+21604384..21604614hypothetical protein
LOC_Os07g36170Os.11766.1.S1_at11/117+21613259..21618622Chitin-inducible gibberellin-responsive protein 1, putative, expressed
LOC_Os07g36180OsAffx.16581.1.S1_at11/117+21619770..21622727pentatricopeptide, putative, expressed
LOC_Os07g36180Os.15739.1.S1_s_at11/117+21619770..21622727pentatricopeptide, putative, expressed
LOC_Os07g36180Os.14454.1.A1_at1/117+21619770..21622727pentatricopeptide, putative, expressed
LOC_Os07g36190Os.2357.1.S1_at10/117+21623925..21627102Isopentenyl-diphosphate delta-isomerase I, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009960biological_processendosperm development
GO:0030041biological_processactin filament polymerization
GO:0045010biological_processactin nucleation
GO:0005618cellular_componentcell wall
GO:0005737cellular_componentcytoplasm
GO:0009524cellular_componentphragmoplast
GO:0003779molecular_functionactin binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52829.1.S1_at--912--2931Chr07:21593635..21593659 (25 bp)
AAGGCAGCTATCCTAGACGCGGATC
LOC_Os07g36150
Os.52829.1.S1_at--922--3691Chr07:21593604..21593628 (25 bp)
CTATGTCGGTAGCAAGTCTTGGCCA
LOC_Os07g36150
Os.52829.1.S1_at--640--1411Chr07:21593525..21593549 (25 bp)
AGACAGTGGGTTTCACCGCAAGCTT
LOC_Os07g36150
Os.52829.1.S1_at--246--2711Chr07:21593506..21593530 (25 bp)
AAGCTTACGCACTTCGTACAGCAGT
LOC_Os07g36150
Os.52829.1.S1_at--701--5731Chr07:21593477..21593501 (25 bp)
GACTGATATTACTTTCTTGCTGGAG
LOC_Os07g36150
Os.52829.1.S1_at--380--8891Chr07:21593384..21593408 (25 bp)
TGAGGGCCTCCGGTTATTTGTGATA
LOC_Os07g36150
Os.52829.1.S1_at--562--1351Chr07:21593356..21593380 (25 bp)
AGAGATTTCCTTGCAATGCTGGACA
LOC_Os07g36150
Os.52829.1.S1_at--186--431Chr07:21593261..21593285 (25 bp)
ATCATTGCAGTCATTCCGTGATCCA
LOC_Os07g36150
Os.52829.1.S1_at--673--8691Chr07:21593243..21593267 (25 bp)
TGATCCACGGGTTAATCTTTTTCCG
LOC_Os07g36150
Os.52829.1.S1_at--462--10391Chr07:21593225..21593249 (25 bp)
TTTTCCGGCGATTCAACACCTGAGG
LOC_Os07g36150
Os.52829.1.S1_at--424--311Chr07:21593155..21593179 (25 bp)
ATACCTATGTTTTACCGTGCACACT
LOC_Os07g36150
Target Sequence 
AAGGCAGCTATCCTAGACGCGGATCAATTGACTATGTCGGTAGCAAGTCTTGGCCACAAGCTCATGAAAACCAATGAATT
CTTGAACATGGACATGAAAAGTTTGGACGAAGACAGTGGGTTTCACCGCAAGCTTACGCACTTCGTACAGCAGTCTCAGA
CTGATATTACTTTCTTGCTGGAGGAAGAGAAGAAAATGCGGTTATTGGTTAAAGACACCGTCGACTATTTCCATGGAAGT
GCAGGAAAGGATGAGGGCCTCCGGTTATTTGTGATAGTAAGAGATTTCCTTGCAATGCTGGACAAGGTGTGCAAGGAGGT
GAAGGAAGCATCAAAAGTTGCTCCAGTAAAAGCAAAAGCCAAACAGCCCTCCCAATCATTGCAGTCATTCCGTGATCCAC
GGGTTAATCTTTTTCCGGCGATTCAACACCTGAGGGCAGATAGCTCTAGCTCAAGTTCTGATGATGAAAGTTAGATCAAC
ATACCTATGTTTTACCGTGCACACT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52829.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis