Browse Element(s) Details


OsAffx.28774.1.S1_at

Description tigr:9635.m03570
TID=OsAffx.28774.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3612010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g36060OsAffx.28773.1.S1_at4/117+21562362..21563417Strictosidine synthase family protein
LOC_Os07g36070OsAffx.15821.1.S1_at10/117+21564127..21567628hypothetical protein
LOC_Os07g36070OsAffx.16289.1.S1_x_at1/117+21564127..21567628hypothetical protein
LOC_Os07g36080Os.11078.1.S1_a_at11/117+21572752..21574339Oxygen-evolving enhancer protein 3-1, chloroplast precursor, putative, expressed
LOC_Os07g36090Os.52996.1.S1_at11/117+21574541..21577636ribosomal protein L28 containing protein, expressed
LOC_Os07g36100NANA7+21578258..21579010transposon protein, putative, unclassified
LOC_Os07g36110Os.54499.1.S1_at11/117+21581163..21582268expressed protein
LOC_Os07g36120OsAffx.28774.1.S1_at10/117+21585408..21587564hypothetical protein
LOC_Os07g36130Os.13874.4.S1_at8/117+21588126..21589281Histone H2A, putative, expressed
LOC_Os07g36140Os.12592.1.S1_at11/117+21590798..21591895Histone H2A, putative, expressed
LOC_Os07g36150Os.52829.1.S1_at11/117+21593104..21599029Formin Homology 2 Domain containing protein, expressed
LOC_Os07g36160NANA7+21604384..21604614hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28774.1.S1_at--787--571Chr07:21587390..21587414 (25 bp)
ATCCATGGCGAGGTGCATGCAGCAG
LOC_Os07g36120
OsAffx.28774.1.S1_at--49--1511Chr07:21587370..21587394 (25 bp)
AGCAGCGCGGGAGAAACTACGACGA
LOC_Os07g36120
OsAffx.28774.1.S1_at--137--1511Chr07:21587299..21587323 (25 bp)
AGCACGAGACAAGCTGTTGGATCTT
LOC_Os07g36120
OsAffx.28774.1.S1_at--458--8812Chr07:21587285..21587309 (25 bp)
TGTTGGATCTTGAACTCGTGCTCGC
LOC_Os07g36120
OsAffx.28774.1.S1_at--359--1851Chr07:21587255..21587279 (25 bp)
ACGAATTCACCGGTGCTCGGGAGTG
LOC_Os07g36120
OsAffx.28774.1.S1_at--477--491Chr07:21587192..21587216 (25 bp)
ATCTGGAGGTCACCAGTTCTTGGAA
LOC_Os07g36120
OsAffx.28774.1.S1_at--903--8151Chr07:21587068..21587092 (25 bp)
GGAAAGAAAGAGCTCACCGCCGGCT
LOC_Os07g36120
OsAffx.28774.1.S1_at--238--4271NONE
CCGGCTGCACTGTGTGGGAGACAAA
NONE
OsAffx.28774.1.S1_at--89--2691Chr07:21585472..21585496 (25 bp)
AAGTCGGGTCTTCACAAATTCCTCG
LOC_Os07g36120
OsAffx.28774.1.S1_at--802--10491Chr07:21585462..21585486 (25 bp)
TTCACAAATTCCTCGTGGCATACCA
LOC_Os07g36120
OsAffx.28774.1.S1_at--680--7531Chr07:21585448..21585472 (25 bp)
GTGGCATACCACAAGCTTGGGTGCT
LOC_Os07g36120
Target Sequence 
ATCCATGGCGAGGTGCATGCAGCAGCGCGGGAGAAACTACGACGAGCGGCGGCGCGGCATCAGATAGGGCAGCGCGGGAG
AAGCTGTGACGAGCACGAGACAAGCTGTTGGATCTTGAACTCGTGCTCGCCGGCGACGAATTCACCGGTGCTCGGGAGTG
CGGCTACAGAGGGGGACCTGGGGGAGGGGGGAGGGGGGATCTGGAGGTCACCAGTTCTTGGAAGGGCGATGCAGAGGGGG
AGATCAAGCTCACCGGCGCTCGGGGGTGCGGCAATAGAGGAGGAGCTCAAGCTCACCACCGGTCACTCGGGGACGAGAGA
AAGGAAAGAAAGAGCTCACCGCCGGCTGCACTGTGTGGGAGACAAAGTCGGGTCTTCACAAATTCCTCGTGGCATACCAC
AAGCTTGGGTGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28774.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis