Browse Element(s) Details


Os.54499.1.S1_at

Description gb:AK105372.1
DB_XREF= gi:32990581
TID=Os.54499.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54499 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-120-D03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-120-D03, full insert sequence.
FL= gb:AK105372.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3611011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g36040OsAffx.28773.1.S1_at10/117+21557089..21557835Strictosidine synthase family protein
LOC_Os07g36050OsAffx.5546.1.S1_at11/117+21559823..21560332hypothetical protein
LOC_Os07g36060OsAffx.28773.1.S1_at4/117+21562362..21563417Strictosidine synthase family protein
LOC_Os07g36070OsAffx.15821.1.S1_at10/117+21564127..21567628hypothetical protein
LOC_Os07g36070OsAffx.16289.1.S1_x_at1/117+21564127..21567628hypothetical protein
LOC_Os07g36080Os.11078.1.S1_a_at11/117+21572752..21574339Oxygen-evolving enhancer protein 3-1, chloroplast precursor, putative, expressed
LOC_Os07g36090Os.52996.1.S1_at11/117+21574541..21577636ribosomal protein L28 containing protein, expressed
LOC_Os07g36100NANA7+21578258..21579010transposon protein, putative, unclassified
LOC_Os07g36110Os.54499.1.S1_at11/117+21581163..21582268expressed protein
LOC_Os07g36120OsAffx.28774.1.S1_at10/117+21585408..21587564hypothetical protein
LOC_Os07g36130Os.13874.4.S1_at8/117+21588126..21589281Histone H2A, putative, expressed
LOC_Os07g36140Os.12592.1.S1_at11/117+21590798..21591895Histone H2A, putative, expressed
LOC_Os07g36150Os.52829.1.S1_at11/117+21593104..21599029Formin Homology 2 Domain containing protein, expressed
LOC_Os07g36160NANA7+21604384..21604614hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54499.1.S1_at--1124--9391Chr07:21581664..21581844 (25 bp)
TCGTCATCTCGTGGATCGTGCTGGT
LOC_Os07g36110
Os.54499.1.S1_at--1144--8191Chr07:21581892..21581916 (25 bp)
GGAAGGCGGCCAAGTGCAGCCTCCC
LOC_Os07g36110
Os.54499.1.S1_at--570--8411Chr07:21582020..21582044 (25 bp)
GGCCGCCACCCTTGATCGATTCGTT
LOC_Os07g36110
Os.54499.1.S1_at--828--511Chr07:21582034..21582058 (25 bp)
ATCGATTCGTTGCTTCTCATCCATT
LOC_Os07g36110
Os.54499.1.S1_at--566--10311Chr07:21582057..21582081 (25 bp)
TTTCTCCTGCAGAAATGGGATGAAG
LOC_Os07g36110
Os.54499.1.S1_at--693--6931Chr07:21582088..21582112 (25 bp)
GTAGGTGGTGTGATTTTTGCTTGAT
LOC_Os07g36110
Os.54499.1.S1_at--1003--10391Chr07:21582102..21582126 (25 bp)
TTTTGCTTGATGTGCGTGAGGTGAT
LOC_Os07g36110
Os.54499.1.S1_at--56--7771Chr07:21582121..21582145 (25 bp)
GGTGATGGGAACGATTAGATGCTAA
LOC_Os07g36110
Os.54499.1.S1_at--568--6991Chr07:21582187..21582211 (25 bp)
GTAATGTACTGGTAAGCTAGCGTCA
LOC_Os07g36110
Os.54499.1.S1_at--714--3711Chr07:21582203..21582227 (25 bp)
CTAGCGTCAGTGTGCTTGCAGTGGA
LOC_Os07g36110
Os.54499.1.S1_at--736--2271Chr07:21582244..21582268 (25 bp)
AAATGCAGAGGTTGGTTTCAGTACT
LOC_Os07g36110
Target Sequence 
TCGTCATCTCGTGGATCGTGCTGGTGGTGGGGTTGGCGCTGCTGATCCTGGGGGCGCTGCCGAACGCCGAGAGGAAGGCG
GCCAAGTGCAGCCTCCCGCGCCACCACTTCCTCTCCATCGGCGGCATCCTCTGCTTCGTCCACGGCCTCTTCTGCCTCGT
CTACTACGCCTCCGCCAACGCCGCCAAGCGGGAGGAGGGCGGCCGCCACCCTTGATCGATTCGTTGCTTCTCATCCATTT
CTCCTGCAGAAATGGGATGAAGACGAATGTAGGTGGTGTGATTTTTGCTTGATGTGCGTGAGGTGATGGGAACGATTAGA
TGCTAATTATTAGTGATTAGAGCATGTAAAATTATATCAATGTGCATGTAATGTACTGGTAAGCTAGCGTCAGTGTGCTT
GCAGTGGAAGGAAAATCTTGTAGGAAATGCAGAGGTTGGTTTCAGTACT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54499.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis