Browse Element(s) Details


OsAffx.28775.2.S1_at

Description tigr:9635.m03583
TID=OsAffx.28775.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g362407/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g36200Os.48958.1.S1_s_at4/117+21627777..21631409expressed protein
LOC_Os07g36210Os.52465.1.S1_at9/117+21632111..21634912expressed protein
LOC_Os07g36220Os.5139.2.S1_x_at1/117+21638888..21640543hypothetical protein
LOC_Os07g36230Os.27111.1.S1_at11/117+21651560..21655665NPH3 family protein, expressed
LOC_Os07g36230OsAffx.8775.1.S1_at6/117+21651560..21655665NPH3 family protein, expressed
LOC_Os07g36240OsAffx.28775.1.S1_x_at11/117+21656307..21657052hypothetical protein
LOC_Os07g36240OsAffx.28775.2.S1_at7/117+21656307..21657052hypothetical protein
LOC_Os07g36250Os.9780.1.S1_at11/117+21666526..21670201Peptide chain release factor 2, putative, expressed
LOC_Os07g36260Os.39859.1.S1_at11/117+21673087..21675683transposon protein, putative, Pong sub-class, expressed
LOC_Os07g36270NANA7+21679126..21683366retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28775.2.S1_at--171--7591Chr07:21656573..21656597 (25 bp)
GGGACAGTACTGCTATACAGTTCGG
LOC_Os07g36240
OsAffx.28775.2.S1_at--417--9871Chr07:21656558..21656582 (25 bp)
TACAGTTCGGGCAAGGACATGCTTT
LOC_Os07g36240
OsAffx.28775.2.S1_at--289--5672Chr03:5731741..5732179 (25 bp)
GACATGCTTTGTGTTTTATTTCCAT
NONE
OsAffx.28775.2.S1_at--130--2651Chr07:21656504..21656528 (25 bp)
AACCATGTGCAATTAACTCGTGTTA
LOC_Os07g36240
OsAffx.28775.2.S1_at--1158--6751Chr07:21656462..21656486 (25 bp)
GTTAAGGACGCTTCTTTGGTGTGAA
LOC_Os07g36240
OsAffx.28775.2.S1_at--637--9831Chr07:21656432..21656456 (25 bp)
TAAATGGCCAGGTCATGTCATGTGC
LOC_Os07g36240
OsAffx.28775.2.S1_at--903--9611Chr07:21656415..21656439 (25 bp)
TCATGTGCCGTTGTGTTTCTTTTTT
LOC_Os07g36240
OsAffx.28775.2.S1_at--334--5251Chr07:21656294..21656318 (25 bp)
GAATCTCTCTGAGCTTTGGACTGGC
NONE
OsAffx.28775.2.S1_at--359--1951Chr07:21656275..21656299 (25 bp)
ACTGGCTATCTCTCTGGTGTAGTAA
NONE
OsAffx.28775.2.S1_at--126--10031Chr07:21656140..21656164 (25 bp)
TAGACACTGTATACTCCTCCTTTAA
NONE
OsAffx.28775.2.S1_at--986--1111Chr07:21656046..21656070 (25 bp)
AGTGACTCAAATGCCCATGTTCTTT
NONE
Target Sequence 
GGGACAGTACTGCTATACAGTTCGGGCAAGGACATGCTTTGTGTTTTATTTCCATGGAAGGACACGTAAAACCATGTGCA
ATTAACTCGTGTTAATTACTAACCCATATGGGTTAAGGACGCTTCTTTGGTGTGAAGATCATAAATGGCCAGGTCATGTC
ATGTGCCGTTGTGTTTCTTTTTTTTTTTTCAGAAGTTGGATTTGGATTTTAAACCTGTGGTGAGCAAAAAGGAAATGGAA
AGTTTTTGTCAGGCGCACCGAAGCACAAAGGTTGGCATAGAATCTCTCTGAGCTTTGGACTGGCTATCTCTCTGGTGTAG
TAAGATCAACAGCATCATGTAGTAATTGGAAGCATGGCACGATCAGGACAAGCATGTGGGAGGAAGTAATAAATTACTAA
TGCTAGTAATATATTCCCTAATTTATTTGGGGTTAGACACTGTATACTCCTCCTTTAACCCTTGTTTTATTGTCTCAAAG
AGCATCCAAAAAGCTCATCAAGGGGGAAAAAGTTCCTAAGCCTAGAAAGTGACTCAAATGCCCATGTTCTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28775.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis