Browse Element(s) Details


Os.40825.1.S1_at

Description gb:AU161166
DB_XREF= gi:10930892
DB_XREF=AU161166
CLONE=C53858
TID=Os.40825.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.40825 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0697C12.21 (P0697C12.21), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g3858011/11decreased apical dominance protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g38530Os.38249.2.S1_at11/111+21963886..21969952early flowering 3, putative, expressed
LOC_Os01g38530Os.38249.1.S1_at11/111+21963886..21969952early flowering 3, putative, expressed
LOC_Os01g38540NANA1+21971994..21978146transposon protein, putative, unclassified
LOC_Os01g38550NANA1+21978762..21981985transposon protein, putative, unclassified
LOC_Os01g38560NANA1+21988532..21989050expressed protein
LOC_Os01g38570NANA1+21990045..21990706hypothetical protein
LOC_Os01g38580Os.37454.1.S1_at11/111+21992466..21996156decreased apical dominance protein, putative, expressed
LOC_Os01g38580Os.40825.1.S1_at11/111+21992466..21996156decreased apical dominance protein, putative, expressed
LOC_Os01g38580OsAffx.9447.1.S1_x_at1/111+21992466..21996156decreased apical dominance protein, putative, expressed
LOC_Os01g38590OsAffx.23555.1.S1_at11/111+21998535..21998816hypothetical protein
LOC_Os01g38600NANA1+22002399..22003015hypothetical protein
LOC_Os01g38610Os.21231.1.S1_at11/111+22014286..22016549Helix-loop-helix DNA-binding domain containing protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0009688biological_processabscisic acid biosynthesis
GO:0009733biological_processresponse to auxin stimulus
GO:0010223biological_processsecondary shoot formation
GO:0009507cellular_componentchloroplast
GO:0009535cellular_componentthylakoid membrane (sensu Viridiplantae)
GO:0009570cellular_componentchloroplast stroma
GO:0009579cellular_componentthylakoid
GO:0016702molecular_functionoxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen
GO:0045549molecular_function9-cis-epoxycarotenoid dioxygenase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.40825.1.S1_at--79--2711Chr01:21996124..21996148 (25 bp)
AAGCTAAGACCTACCCCAGCTCAGT
LOC_Os01g38580
Os.40825.1.S1_at--943--1571Chr01:21996107..21996131 (25 bp)
AGCTCAGTGCTGCTCAAGTTTTGCT
LOC_Os01g38580
Os.40825.1.S1_at--675--2831Chr01:21996092..21996116 (25 bp)
AAGTTTTGCTCGGTGCCGTGCATCG
LOC_Os01g38580
Os.40825.1.S1_at--18--3931Chr01:21995988..21996012 (25 bp)
CGGCGTCACGTCGATAGCAGAGCAA
LOC_Os01g38580
Os.40825.1.S1_at--971--8212Chr10:1773636..1773656 (21 bp)
GGCAAGGTTGAAGGGCACATCTAGC
NONE
Os.40825.1.S1_at--90--2891Chr01:21995947..21995971 (25 bp)
AAGGGCACATCTAGCTGCTTCTTGT
LOC_Os01g38580
Os.40825.1.S1_at--961--5571Chr01:21995233..21995255 (23 bp)
GAAAGGTATCGTGTCCTAGGCTCCT
LOC_Os01g38580
Os.40825.1.S1_at--188--10151Chr01:21995227..21995251 (25 bp)
TATCGTGTCCTAGGCTCCTGGCTAC
LOC_Os01g38580
Os.40825.1.S1_at--778--2431Chr01:21995158..21995182 (25 bp)
AAAAGTAAAGCAGCCGATCGAGCAG
LOC_Os01g38580
Os.40825.1.S1_at--102--2731Chr01:21995151..21995175 (25 bp)
AAGCAGCCGATCGAGCAGCGGTGCA
LOC_Os01g38580
Os.40825.1.S1_at--562--1511Chr01:21995137..21995162 (25 bp)
AGCAGCGGTGCAGCGCCATTCGTGC
LOC_Os01g38580
Target Sequence 
AAGCTAAGACCTACCCCAGCTCAGTGCTGCTCAAGTTTTGCTCGGTGCCGTGCATCGCGCCGCCGCCGCCGGCCACCACC
ATCGTCGCCGCCGCTGACCGCCACCTCGCGAGGTGCCGACGGCCGTCGCGGGCTCGCGGCGTCACGTCGATAGCAGAGCA
AGCAGGTGGCAAGGTTGAAGGGCACATCTAGCTGCTTCTTGTTCTACCCCCAAGAAAGGTATCGTGTCCTAGGCTCCTGG
CTACTCCCCCACTATTTTGGCCTTTTGGGTAAGCACAGACCCGGNCATAAAAAGTAAAGCAGCCGATCGAGCAGCGGTGC
AGCGCCATTCGTGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.40825.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis