Browse Element(s) Details


Os.409.1.S1_at

Description gb:AK103557.1
DB_XREF= gi:32988766
TID=Os.409.1
CNT=28
FEA=FLmRNA
TIER=FL+Stack
STK=6
UG=Os.409 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) rice Nramp1 protein(Natural-resistance-associated macrophage protein 1) (OJ1354_H07.8), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033132H19, full insert sequence.
FL= gb:AK103557.1 gb:AK121534.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g1546011/11Metal transporter Nramp1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g15440Os.9991.1.S1_at2/117+8928716..8942116alanyl-tRNA synthetase family protein, expressed
LOC_Os07g15450OsAffx.1431.1.S1_at8/117+8948666..8949295retrotransposon protein, putative, unclassified
LOC_Os07g15460Os.409.1.S1_at11/117+8964330..8969177Metal transporter Nramp1, putative, expressed
LOC_Os07g15470NANA7+8972971..8978663retrotransposon protein, putative, unclassified
LOC_Os07g15480NANA7+8979594..8981217hypothetical protein
LOC_Os07g15490Os.18530.1.S1_at11/117+8987441..8991142BTB/POZ domain containing protein, expressed
LOC_Os07g15490OsAffx.24019.1.S1_at1/117+8987441..8991142BTB/POZ domain containing protein, expressed
LOC_Os07g15490OsAffx.24019.1.S1_x_at1/117+8987441..8991142BTB/POZ domain containing protein, expressed
LOC_Os07g15500OsAffx.28461.1.S1_at11/117+8992346..8995512OB-fold nucleic acid binding domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006828biological_processmanganese ion transport
GO:0006875biological_processmetal ion homeostasis
GO:0015691biological_processcadmium ion transport
GO:0015692biological_processlead ion transport
GO:0030001biological_processmetal ion transport
GO:0005384molecular_functionmanganese ion transporter activity
GO:0015103molecular_functioninorganic anion transporter activity
GO:0046873molecular_functionmetal ion transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.409.1.S1_at--286--5131Chr07:8968482..8968506 (25 bp)
GCACAAAGCTGGTCGGCTGGATCCT
LOC_Os07g15460
Os.409.1.S1_at--1039--5671Chr07:8968522..8968546 (25 bp)
GACATTCGCCAACGTGCTCATCGGC
LOC_Os07g15460
Os.409.1.S1_at--411--2931Chr07:8968607..8968631 (25 bp)
AAGGACACCGTCAAGTTCGTGTCTC
LOC_Os07g15460
Os.409.1.S1_at--583--1231Chr07:8968620..8968644 (25 bp)
AGTTCGTGTCTCGTCGTGAGCTGCA
LOC_Os07g15460
Os.409.1.S1_at--210--1431Chr07:8968662..8968686 (25 bp)
AGAAAGCACAGGTAGCCACCTGCGT
LOC_Os07g15460
Os.409.1.S1_at--517--1491Chr07:8968700..8968724 (25 bp)
AGCAAAGAGCCACCCGTGTAGTACC
LOC_Os07g15460
Os.409.1.S1_at--1100--9191Chr07:8968727..8968751 (25 bp)
TCCAGACCGGTTACCGGTGTTGGCT
LOC_Os07g15460
Os.409.1.S1_at--18--9791Chr07:8968853..8968877 (25 bp)
TAACCGGCTGAAATTTTGGCCCATG
LOC_Os07g15460
Os.409.1.S1_at--305--10851Chr07:8968868..8968892 (25 bp)
TTGGCCCATGGGAGTAGATTGTTGC
LOC_Os07g15460
Os.409.1.S1_at--968--5031Chr07:8968918..8968942 (25 bp)
GCAGATTGGCAGAATGTTGTAGCTA
LOC_Os07g15460
Os.409.1.S1_at--520--7371Chr07:8968987..8969011 (25 bp)
GTGAGTTTTCTTGGATGCGAGGACA
LOC_Os07g15460
Target Sequence 
GCACAAAGCTGGTCGGCTGGATCCTCCACAACGCGCTCCCGACATTCGCCAACGTGCTCATCGGCATCGTGCTGTTCCCG
CTCATGCTGCTCTACGTCGTCGCCGTGATCTACCTGACGTTCAGGAAGGACACCGTCAAGTTCGTGTCTCGTCGTGAGCT
GCAGGCCGGCGACGACACCGAGAAAGCACAGGTAGCCACCTGCGTCGCCGACGAGNACAGCAAAGAGCCACCCGTGTAGT
ACCCTTCCAGACCGGTTACCGGTGTTGGCTGGTTTTTATTGGATAGATGTTTAGGTCCAATTTTTTTTATATAAAAAATC
CAATAGATGTTTAGGTCCNAAATTTTTGAATTCAAAAACCGGTTAGCAGTGATAACCGGCTGAAATTTTGGCCCATGGGA
GTAGATTGTTGCTTTTTTTCTTAGTGATTAGTTATTGGCAGATTGGCAGAATGTTGTAGCTAGGCAATCTAATTGTATGG
TTAGATATTTAGTCATAAATCCAAGAGTGAGTTTTCTTGGATGCGAGGACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.409.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis