Browse Element(s) Details


OsAffx.1431.1.S1_at

Description gb:NM_186913.1
DB_XREF= gi:34900911
GEN=OJ1354_H07.5
TID=OsAffx.1431.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein~predicted by GeneMark.hmm etc. (OJ1354_H07.5), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g154508/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g15430Os.26882.1.S1_at11/117+8924439..8927180expressed protein
LOC_Os07g15440Os.9991.1.S1_at2/117+8928716..8942116alanyl-tRNA synthetase family protein, expressed
LOC_Os07g15450OsAffx.1431.1.S1_at8/117+8948666..8949295retrotransposon protein, putative, unclassified
LOC_Os07g15460Os.409.1.S1_at11/117+8964330..8969177Metal transporter Nramp1, putative, expressed
LOC_Os07g15470NANA7+8972971..8978663retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.1431.1.S1_at--878--2171Chr07:8948985..8949009 (25 bp)
ACACGCAACAGCACTATTTCGGGCA
LOC_Os07g15450
OsAffx.1431.1.S1_at--966--191Chr07:8948970..8948994 (25 bp)
ATTTCGGGCAGACGCTACGCAAGAA
LOC_Os07g15450
OsAffx.1431.1.S1_at--867--1391Chr07:8948862..8948886 (25 bp)
AGACGTCGAGCTGGCGGTCATTGTC
LOC_Os07g15450
OsAffx.1431.1.S1_at--659--6911Chr07:8948822..8948846 (25 bp)
GTATGACGCAGTGATCGACTACCTC
LOC_Os07g15450
OsAffx.1431.1.S1_at--760--9971Chr07:8948803..8948827 (25 bp)
TACCTCGCCGGTCTGCAGTATAAGG
LOC_Os07g15450
OsAffx.1431.1.S1_at--729--7571Chr07:8948779..8948803 (25 bp)
GGGCTGACTGGTGCCATGGTCTTCA
LOC_Os07g15450
OsAffx.1431.1.S1_at--871--7771Chr07:8948770..8948794 (25 bp)
GGTGCCATGGTCTTCAGCGACTACA
LOC_Os07g15450
OsAffx.1431.1.S1_at--683--1631Chr07:8948755..8948779 (25 bp)
AGCGACTACACTCGCTGCCGGATTG
LOC_Os07g15450
OsAffx.1431.1.S1_at--689--9731Chr07:8948279..8948303 (25 bp)
TCAATGACCGCATAGCTAGTGGCTG
NONE
OsAffx.1431.1.S1_at--839--8031Chr07:8948202..8948226 (25 bp)
GGAGTTTATCAAGTCCCCGGAATGG
NONE
OsAffx.1431.1.S1_at--29--2851Chr07:8948192..8948216 (25 bp)
AAGTCCCCGGAATGGAGCTCAAGCG
NONE
Target Sequence 
ACACGCAACAGCACTATTTCGGGCAGACGCTACGCAAGAAGTGGGACGACTGGAAGCACGATTGGTTCTACACCGTCCTC
CCTGACAACGTCCACCTTTGGCTCCCTACAGCACCGCCCGTTCAGACGTCGAGCTGGCGGTCATTGTCGGTGTTGGGAGA
CACGTATGACGCAGTGATCGACTACCTCGCCGGTCTGCAGTATAAGGGGCTGACTGGTGCCATGGTCTTCAGCGACTACA
CTCGCTGCCGGATTGCGCCTCTCCGGGAGCGGATGGCGCTGGCGGCAGCCACGTTTTGGGGGACCGCTACCTATCCGCCC
GAGGCGGCCATGGAGGAATGTCCACGGGCGGGGGCGCCCAATGGGCACCGAACCGGCGCAGCCCTCAATGACCGCATAGC
TAGTGGCTGGGAGGAGGAAGAAATGGCCGTGCAAGACGGCGGAGACCAAGCCGTGCCGGGGGGAGTTTATCAAGTCCCCG
GAATGGAGCTCAAGCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.1431.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis