Browse Element(s) Details


Os.26882.1.S1_at

Description gb:AK109782.1
DB_XREF= gi:32994991
TID=Os.26882.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.26882 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-147-C06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-147-C06, full insert sequence.
FL= gb:AK109782.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g1543011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g15410OsAffx.30486.1.S1_at1/117+8903861..8910559hypothetical protein
LOC_Os07g15420OsAffx.28460.1.S1_at11/117+8913742..8917069hAT family dimerisation domain containing protein, expressed
LOC_Os07g15430Os.26882.1.S1_at11/117+8924439..8927180expressed protein
LOC_Os07g15440Os.9991.1.S1_at2/117+8928716..8942116alanyl-tRNA synthetase family protein, expressed
LOC_Os07g15450OsAffx.1431.1.S1_at8/117+8948666..8949295retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.26882.1.S1_at--357--3291Chr07:8925586..8925610 (25 bp)
CAAAGCTGCATTGCGGAGCGTAGCA
LOC_Os07g15430
Os.26882.1.S1_at--818--5871Chr07:8925601..8925625 (25 bp)
GAGCGTAGCAATGGTATTCCCCACC
LOC_Os07g15430
Os.26882.1.S1_at--863--6291Chr07:8925638..8925662 (25 bp)
GATGATCATGTCTACTTCTTTTCCA
LOC_Os07g15430
Os.26882.1.S1_at--224--10571Chr07:8925653..8925677 (25 bp)
TTCTTTTCCATAGCCGGAAGCACGG
LOC_Os07g15430
Os.26882.1.S1_at--1128--6211Chr07:8925686..8925710 (25 bp)
GAGGCCGTGGTTACTGTTGATGTAA
LOC_Os07g15430
Os.26882.1.S1_at--591--9111Chr07:8925733..8925757 (25 bp)
TGCTGAGCTTGATGTCCGAAAATAC
LOC_Os07g15430
Os.26882.1.S1_at--724--531Chr07:8925779..8925803 (25 bp)
ATCGCCAGTGAGATGTCCACATATC
LOC_Os07g15430
Os.26882.1.S1_at--997--6131Chr07:8926839..8926863 (25 bp)
GAGGTGGCACATGGACAAACTGAAA
LOC_Os07g15430
Os.26882.1.S1_at--617--2651Chr07:8926965..8926989 (25 bp)
AAGCCAGTTGGTGTTGAGATTCAGG
LOC_Os07g15430
Os.26882.1.S1_at--33--8051Chr07:8927019..8927043 (25 bp)
GGAGTTCATTTGTCGTTTGCAGTAT
LOC_Os07g15430
Os.26882.1.S1_at--719--3691Chr07:8927107..8927131 (25 bp)
CTAGTGAACTTTTACTGCAAGCTGA
LOC_Os07g15430
Target Sequence 
CAAAGCTGCATTGCGGAGCGTAGCAATGGTATTCCCCACCATAAGCATGGATGATGATCATGTCTACTTCTTTTCCATAG
CCGGAAGCACGGACAAATTGGAGGCCGTGGTTACTGTTGATGTAAGGAATAAGAAGATACAAGGAGTTGCTGAGCTTGAT
GTCCGAAAATACTATTTCGGTATGNCCACCTACATCGCCAGTGAGATGTCCACATATCTGAAGAAAGTCACTACAGGCAC
AGGNGAGGTGGCACATGGACAAACTGAAAGTGCAGCANTTGAAGTGAGGCGCATGTGAAAGGCGTGGGGGCCCATATAAA
GAAGAAGAAACATTGGAAGAAAGAGCATCAGTGTACAGATGGATAGATGGAAGCCAGTTGGTGTTGAGATTCAGGATGCT
GGTAACATTGTTGGTGGCGGTTTAGGAGTTCATTTGTCGTTTGCAGTATGGAAACTGGCTTGGGGTTTATCTGCGCCTAG
AGAGATANTTGTAGGATACGATTTATTGTGTACTAGTGAACTTTTACTGCAAGCTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.26882.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis