Browse Element(s) Details


OsAffx.28460.1.S1_at

Description tigr:9635.m01535
TID=OsAffx.28460.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g1542011/11hAT family dimerisation domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g15390OsAffx.16281.1.S1_at11/117+8891577..8892202hypothetical protein
LOC_Os07g15400OsAffx.10162.1.S1_at6/117+8896618..8897117hypothetical protein
LOC_Os07g15410OsAffx.30486.1.S1_at1/117+8903861..8910559hypothetical protein
LOC_Os07g15420OsAffx.28460.1.S1_at11/117+8913742..8917069hAT family dimerisation domain containing protein, expressed
LOC_Os07g15430Os.26882.1.S1_at11/117+8924439..8927180expressed protein
LOC_Os07g15440Os.9991.1.S1_at2/117+8928716..8942116alanyl-tRNA synthetase family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28460.1.S1_at--623--3011Chr07:8914417..8914441 (25 bp)
AATGCTTGGTCTAATGCTTGCCCTG
LOC_Os07g15420
OsAffx.28460.1.S1_at--709--4912Chr11:28449366..28449871 (25 bp)
GCTTGCCCTGAACTTGATGAAGACT
NONE
OsAffx.28460.1.S1_at--206--8571Chr07:8914358..8914382 (25 bp)
TGTGCCTAGTCCACTAGTAGCCGAC
LOC_Os07g15420
OsAffx.28460.1.S1_at--985--8951Chr07:8914323..8914347 (25 bp)
TGACAGACATCTGCAGGGCCACTGG
LOC_Os07g15420
OsAffx.28460.1.S1_at--534--1071Chr07:8914194..8914218 (25 bp)
AGGGCAAAGCTACAACTACACGGTT
LOC_Os07g15420
OsAffx.28460.1.S1_at--510--8851Chr07:8914154..8914178 (25 bp)
TGATGCCGACGCTGAAGGAAGCCCG
LOC_Os07g15420
OsAffx.28460.1.S1_at--567--4211Chr07:8914116..8914140 (25 bp)
CCGATGACAGTAGCTCCAGATGGAT
LOC_Os07g15420
OsAffx.28460.1.S1_at--850--9891Chr07:8913880..8913904 (25 bp)
TACTCACGCTACTCAAGACCAGGAT
LOC_Os07g15420
OsAffx.28460.1.S1_at--845--6251Chr07:8913855..8913879 (25 bp)
GATGGTGCTCCAACCTCACAAAGAA
LOC_Os07g15420
OsAffx.28460.1.S1_at--888--10191Chr07:8913826..8913850 (25 bp)
TATTAATCCGATAGGCCGCCAACAA
LOC_Os07g15420
OsAffx.28460.1.S1_at--212--2471Chr07:8913797..8913821 (25 bp)
AACAGTTTGACACGCCCCAGGATAG
LOC_Os07g15420
Target Sequence 
AATGCTTGGTCTAATGCTTGCCCTGAACTTGATGAAGACTCGACCGAGAGTGACGCCCCTGTGCCTAGTCCACTAGTAGC
CGACCTAGTGGACTTGACAGACATCTGCAGGGCCACTGGGGCTTCTAGTGTTGCTGAGTGGGCTGAAAAGAACGTAGGCG
ACAATCATATTGGGAAGAGGAAGACTCGACAGCGGCCAAAAGCACCTGCAGCCAAAAAAACAAAGGGCAAAGCTACAACT
ACACGGTTGAGGAGTGTCGATAGTGATGCCGACGCTGAAGGAAGCCCGGAATACCAAGAGTCCGATGACAGTAGCTCCAG
ATGGATACAGATGATGGAGATGACGGTGGTCAAGGAGGCCAAGGAGGCCAAGGCACCACTGATGTGCCTTCTAGGGGTCA
CACACCTCAGTGAGGCCGACTTTACTCACGCTACTCAAGACCAGGATGATGGTGCTCCAACCTCACAAAGAACTACTATT
AATCCGATAGGCCGCCAACAACAACAACAGTTTGACACGCCCCAGGATAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28460.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis