Browse Element(s) Details


OsAffx.10162.1.S1_at

Description gb:NM_186908.1
DB_XREF= gi:34900901
GEN=OJ1057_E05.14
TID=OsAffx.10162.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein~predicted by GlimmerM (OJ1057_E05.14), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g154006/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g15370Os.9420.1.S1_at11/117+8869889..8877210Metal transporter Nramp1, putative, expressed
LOC_Os07g15380OsAffx.28458.1.S1_at11/117+8881477..8881935NA
LOC_Os07g15390OsAffx.16281.1.S1_at11/117+8891577..8892202hypothetical protein
LOC_Os07g15400OsAffx.10162.1.S1_at6/117+8896618..8897117hypothetical protein
LOC_Os07g15410OsAffx.30486.1.S1_at1/117+8903861..8910559hypothetical protein
LOC_Os07g15420OsAffx.28460.1.S1_at11/117+8913742..8917069hAT family dimerisation domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.10162.1.S1_at--847--2551Chr07:8896708..8896732 (25 bp)
AACTGGCATGGCCTTAATGAAAAAC
LOC_Os07g15400
OsAffx.10162.1.S1_at--1130--5511Chr07:8896690..8896714 (25 bp)
GAAAAACAATCCCATGAAGCCGCCA
LOC_Os07g15400
OsAffx.10162.1.S1_at--876--5411Chr07:8896675..8896699 (25 bp)
GAAGCCGCCATTTTCGGATTCTATT
LOC_Os07g15400
OsAffx.10162.1.S1_at--536--10611Chr07:8896663..8896687 (25 bp)
TTCGGATTCTATTAATGGAGCCAAG
LOC_Os07g15400
OsAffx.10162.1.S1_at--1073--5851Chr07:8896646..8896670 (25 bp)
GAGCCAAGAGACCTTTTTCATCCAC
LOC_Os07g15400
OsAffx.10162.1.S1_at--588--2091Chr07:8896623..8896647 (25 bp)
ACATCCACCAAGAACACTGATCCTT
LOC_Os07g15400
OsAffx.10162.1.S1_at--334--9691Chr07:8896051..8896075 (25 bp)
TCACTCAGGTCTGCATCAGCGTGGT
NONE
OsAffx.10162.1.S1_at--517--3391Chr07:8896035..8896059 (25 bp)
CAGCGTGGTGTTTGATGGTTATCAC
NONE
OsAffx.10162.1.S1_at--242--811Chr07:8896021..8896045 (25 bp)
ATGGTTATCACTGGGTTCACATCCT
NONE
OsAffx.10162.1.S1_at--795--6611Chr07:8895991..8896015 (25 bp)
GTTGGCCCATGCTATGGCACCCGTT
NONE
OsAffx.10162.1.S1_at--799--851Chr07:8895978..8896002 (25 bp)
ATGGCACCCGTTGGGCAATCTTGGC
NONE
Target Sequence 
AACTGGCATGGCCTTAATGAAAAACAATCCCATGAAGCCGCCATTTTCGGATTCTATTAATGGAGCCAAGAGACCTTTTT
CATCCACATCCACCAAGAACACTGATCCTTTNNANCTCACTCAGGTCTGCATCAGCGTGGTGTTTGATGGTTATCACTGG
GTTCACATCCTCTGCCGTTGGCCCATGCTATGGCACCCGTTGGGCAATCTTGGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.10162.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis