Browse Element(s) Details


Os.9420.1.S1_at

Description gb:AK070788.1
DB_XREF= gi:32980811
TID=Os.9420.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.9420 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative Nramp1 protein (OJ1057_E05.7), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023064O13, full insert sequence.
FL= gb:AK070788.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g1537011/11Metal transporter Nramp1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g15350OsAffx.11949.1.S1_at11/117+8844682..8857280transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g15350Os.47463.1.S1_x_at4/117+8844682..8857280transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g15350Os.14491.2.S1_x_at3/117+8844682..8857280transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g15350Os.27037.1.A1_at1/117+8844682..8857280transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g15350OsAffx.15868.1.S1_at1/117+8844682..8857280transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g15360OsAffx.28457.1.S1_at11/117+8859988..8862602hypothetical protein
LOC_Os07g15360OsAffx.10096.1.S1_x_at2/117+8859988..8862602hypothetical protein
LOC_Os07g15370Os.9420.1.S1_at11/117+8869889..8877210Metal transporter Nramp1, putative, expressed
LOC_Os07g15380OsAffx.28458.1.S1_at11/117+8881477..8881935NA
LOC_Os07g15390OsAffx.16281.1.S1_at11/117+8891577..8892202hypothetical protein
LOC_Os07g15400OsAffx.10162.1.S1_at6/117+8896618..8897117hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006828biological_processmanganese ion transport
GO:0006875biological_processmetal ion homeostasis
GO:0015691biological_processcadmium ion transport
GO:0015692biological_processlead ion transport
GO:0030001biological_processmetal ion transport
GO:0005384molecular_functionmanganese ion transporter activity
GO:0015103molecular_functioninorganic anion transporter activity
GO:0046873molecular_functionmetal ion transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9420.1.S1_at--823--391Chr07:8870369..8870393 (25 bp)
ATCAGGAAGGACTCCGTCGTCACCT
LOC_Os07g15370
Os.9420.1.S1_at--950--2071Chr07:8870236..8870260 (25 bp)
ACATCCCGCTCCCAAGGTAGAGAAG
LOC_Os07g15370
Os.9420.1.S1_at--842--5351Chr07:8870209..8870233 (25 bp)
GAAGATCGACATGCATACGTATGGT
LOC_Os07g15370
Os.9420.1.S1_at--845--1891Chr07:8870167..8870191 (25 bp)
ACGTATATACGCGTACATTGTGAAT
LOC_Os07g15370
Os.9420.1.S1_at--237--2071Chr07:8870153..8870177 (25 bp)
ACATTGTGAATATACGTACTTACGT
LOC_Os07g15370
Os.9420.1.S1_at--347--571Chr07:8870116..8870140 (25 bp)
ATCCTCTATGGATGCCACGTGCGTG
LOC_Os07g15370
Os.9420.1.S1_at--704--4631Chr07:8870092..8870116 (25 bp)
GCGTCGGAGCCGTTCGTTTATATTT
LOC_Os07g15370
Os.9420.1.S1_at--107--9391Chr07:8870079..8870103 (25 bp)
TCGTTTATATTTGTGCGGTCCAGAT
LOC_Os07g15370
Os.9420.1.S1_at--828--3971Chr07:8870064..8870088 (25 bp)
CGGTCCAGATCGCTCGCAGATCGAT
LOC_Os07g15370
Os.9420.1.S1_at--75--7731Chr07:8869995..8870019 (25 bp)
GGTGGCTCATGTATCCTTGTAATTT
LOC_Os07g15370
Os.9420.1.S1_at--203--9731Chr07:8869948..8869972 (25 bp)
TAATTCAGGGCAGAGCCAACGTCCT
LOC_Os07g15370
Target Sequence 
ATCAGGAAGGACTCCGTCGTCACCTTCGTCGCCGACTCCTCCCTCGCCGCCGTCGTCGACGCCGAGAAGGCCGACGCCGG
CGACCTCGCCGTCGACGACGACGAGCCCTTGCCGTACCGCGACGACCTGGCCGACATCCCGCTCCCAAGGTAGAGAAGAA
GAAGATCGACATGCATACGTATGGTATAGCGTATGTATACGTACGTATATACGCGTACATTGTGAATATACGTACTTACG
TACGTATATGTGCATCCTCTATGGATGCCACGTGCGTGCGTCGGAGCCGTTCGTTTATATTTGTGCGGTCCAGATCGCTC
GCAGATCGATCGATCGACAAGGGTGTGCAATTAATATATAAGCATTTGAGGGGAGGTGGCTCATGTATCCTTGTAATTTA
TATGTACGATATGATTTATCATAATTCAGGGCAGAGCCAACGTCCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9420.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis