Browse Element(s) Details


Os.41043.1.S1_at

Description gb:AK119447.1
DB_XREF= gi:37989070
TID=Os.41043.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.41043 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative beta-galactosidase (OJ1029_F04.3), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-133-D03, full insert sequence.
FL= gb:AK119447.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g3492010/11Beta-galactosidase precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g34890OsAffx.21285.2.S1_at11/111+19591311..19607305glycosyl transferase family 48 protein, putative
LOC_Os01g34890Os.20183.1.S1_at1/111+19591311..19607305glycosyl transferase family 48 protein, putative
LOC_Os01g34900OsAffx.27867.1.S1_s_at2/111+19608274..19609113glycosyl transferase family 48 protein, putative, expressed
LOC_Os01g34910NANA1+19611808..19613796hypothetical protein
LOC_Os01g34920Os.41043.1.S1_at10/111+19622416..19628985Beta-galactosidase precursor, putative, expressed
LOC_Os01g34930Os.20616.2.S1_x_at11/111+19630240..19632883glycosyl transferase family 48 protein, putative, expressed
LOC_Os01g34930Os.20616.2.S1_at11/111+19630240..19632883glycosyl transferase family 48 protein, putative, expressed
LOC_Os01g34930Os.20616.1.S1_at10/111+19630240..19632883glycosyl transferase family 48 protein, putative, expressed
LOC_Os01g34940OsAffx.21282.1.S1_at7/111+19651660..19652316hypothetical protein
LOC_Os01g34940OsAffx.7080.1.S1_x_at1/111+19651660..19652316hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0004565molecular_functionbeta-galactosidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.41043.1.S1_at--124--891Chr01:19622679..19622703 (25 bp)
AGGCCACTTGCTGATTGATCTACAT
LOC_Os01g34920
Os.41043.1.S1_at--513--4411Chr01:19622638..19622662 (25 bp)
GCCATGTCTTTGATTAATTAGGTCT
LOC_Os01g34920
Os.41043.1.S1_at--549--10431Chr01:19622621..19622645 (25 bp)
TTAGGTCTTTAATTAGTCGCTTAAT
LOC_Os01g34920
Os.41043.1.S1_at--457--10731Chr01:19622580..19622604 (25 bp)
TTGAGTTAAGCTGGTAGTCGCCCCT
LOC_Os01g34920
Os.41043.1.S1_at--355--1131Chr01:19622565..19622589 (25 bp)
AGTCGCCCCTGGTGCATGTGTTAAT
LOC_Os01g34920
Os.41043.1.S1_at--1006--10071Chr01:19622513..19622537 (25 bp)
TAGGGTTCTCTGATCAACTGTTGAT
LOC_Os01g34920
Os.41043.1.S1_at--196--3271Chr01:19622499..19622523 (25 bp)
CAACTGTTGATTGCAGAGACGCAGA
LOC_Os01g34920
Os.41043.1.S1_at--916--6111Chr01:19622476..19622500 (25 bp)
GAGTGTGATATATACTGGGACCAAA
LOC_Os01g34920
Os.41043.1.S1_at--809--1951Chr01:19622463..19622487 (25 bp)
ACTGGGACCAAATATTTCATCTATG
LOC_Os01g34920
Os.41043.1.S1_at--743--5331Chr01:19622439..19622463 (25 bp)
GAAGTACTTTTACGATCGAGTGGTT
LOC_Os01g34920
Os.41043.1.S1_at--548--10491Chr01:19622416..19622440 (25 bp)
TTAAACATGTGTGTTAATGCCCTTG
NONE
Target Sequence 
AGGCCACTTGCTGATTGATCTACATGCATATATATGGAGTGGCCATGTCTTTGATTAATTAGGTCTTTAATTAGTCGCTT
AATTAGGATGGTTTGTTTATTGAGTTAAGCTGGTAGTCGCCCCTGGTGCATGTGTTAATTCGGGGGTAAAAAGTGAGTTT
ATTAATTAGGGTTCTCTGATCAACTGTTGATTGCAGAGACGCAGAGTGTGATATATACTGGGACCAAATATTTCATCTAT
GAAGTACTTTTACGATCGAGTGGTTAAACATGTGTGTTAATGCCCTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.41043.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis