Browse Element(s) Details


Os.4148.1.S2_a_at

Description gb:AB120430.1
DB_XREF= gi:37360970
GEN=rpoT2
TID=Os.4148.1
CNT=12
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.4148 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) chloroplast rpoT2 mRNA for T7 bacteriophage-type single subunit RNA polymerase, complete cds.
PROD=T7 bacteriophage-type single subunit RNApolymerase
FL= gb:AB120430.1 gb:AB096015.1 gb:AK058530.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4423011/11DNA-directed RNA polymerase 3, chloroplast precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g44180Os.51814.1.S1_at11/116+26651927..26658234NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os06g44190NANA6+26659030..26659360hypothetical protein
LOC_Os06g44200Os.9467.1.S1_at11/116+26660041..26663598expressed protein
LOC_Os06g44210Os.46083.1.S1_a_at11/116+26664154..26668595protein phosphatase type-2C, putative, expressed
LOC_Os06g44220Os.55687.1.S1_at1/116+26675856..26676198Uncharacterized protein family protein
LOC_Os06g44230Os.4148.1.S2_a_at11/116+26679172..26689052DNA-directed RNA polymerase 3, chloroplast precursor, putative, expressed
LOC_Os06g44240OsAffx.28096.1.S1_at11/116+26689717..26691642hypothetical protein
LOC_Os06g44250Os.55671.1.S1_at10/116+26692491..26695436Haemolysin-III related family protein, expressed
LOC_Os06g44250OsAffx.15962.1.S1_at2/116+26692491..26695436Haemolysin-III related family protein, expressed
LOC_Os06g44260OsAffx.15920.1.S1_at11/116+26697965..26699045RmlD substrate binding domain containing protein, expressed
LOC_Os06g44270Os.53321.1.S1_at11/116+26707020..26708889expressed protein
LOC_Os06g44270OsAffx.20617.1.A1_x_at1/116+26707020..26708889expressed protein
LOC_Os06g44280Os.18683.1.S1_at11/116+26713871..26716573retrotransposon protein, putative, Ty3-gypsy subclass, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006350biological_processtranscription
GO:0005739cellular_componentmitochondrion
GO:0003677molecular_functionDNA binding
GO:0003899molecular_functionDNA-directed RNA polymerase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.4148.1.S2_a_at--322--2471Chr06:26688488..26688512 (25 bp)
AACACACCGTTGCAACTGCTGGGAG
LOC_Os06g44230
Os.4148.1.S2_a_at--128--2271Chr06:26688545..26688569 (25 bp)
AAATCAGTTCCCCAGATTGCCGATT
LOC_Os06g44230
Os.4148.1.S2_a_at--993--2391Chr06:26688607..26688631 (25 bp)
AAACAAAACCCAGTACTTCCTGCTG
LOC_Os06g44230
Os.4148.1.S2_a_at--625--10311Chr06:26688664..26688688 (25 bp)
TTTCAGTTCAGGGAATTCACCATGC
LOC_Os06g44230
Os.4148.1.S2_a_at--220--8371Chr06:26688706..26688730 (25 bp)
GGCGATTTTGCGACATAACAGGTTA
LOC_Os06g44230
Os.4148.1.S2_a_at--667--1971Chr06:26688744..26688768 (25 bp)
ACTGATCGATACTAGTCCTGCTGAC
LOC_Os06g44230
Os.4148.1.S2_a_at--747--5851Chr06:26688766..26688790 (25 bp)
GACCACCCTGACCAATTTGATCATA
LOC_Os06g44230
Os.4148.1.S2_a_at--581--2071Chr06:26688830..26688854 (25 bp)
ACATTATCTTTTGGCCTCTTAGGGC
LOC_Os06g44230
Os.4148.1.S2_a_at--1012--6851Chr06:26688875..26688899 (25 bp)
GTATCGGTGCGGTGACCTGGTAATA
LOC_Os06g44230
Os.4148.1.S2_a_at--1105--2371Chr06:26688998..26689022 (25 bp)
AAACGGCTCGATCTTGTCGATTCGT
LOC_Os06g44230
Os.4148.1.S2_a_at--508--6751Chr06:26689021..26689045 (25 bp)
GTTCAAATATCTGCTTCCTTAGGTT
LOC_Os06g44230
Target Sequence 
AACACACCGTTGCAACTGCTGGGAGCCTGGAACAGTATATGGGTTTTTGTCATTGGCAAATCAGTTCCCCAGATTGCCGA
TTTTGGAGGAAGCTAAAAAGTTCCAAGAAACCTGAGCTGAAACAAAACCCAGTACTTCCTGCTGATGTTTTTAGATTCAT
GCAGGATCTACTAGGATTTCAGTTCAGGGAATTCACCATGCTNACACCCAGCCAATGAAGGCGATTTTGCGACATAACAG
GTTATCAACTACAGAATACTGATCGATACTAGTCCTGCTGACCACCCTGACCAATTTGATCATAGGCGACAGTTGAACCA
TAATTTCACTGTCTATACATGTAACATTATCTTTTGGCCTCTTAGGGCTATAATTATAGCCGATTGCTGTATCGGTGCGG
TGACCTGGTAATAATGTGTAGAATAAAGTGCCAAAGAGAAATGTATACTAGTGTACATGATTGCTGGATGCTGTTGATAG
CAAGCAACCTGAAAGAGAGAAATGTACATGAAAACGGCTCGATCTTGTCGATTCGTTCAAATATCTGCTTCCTTAGGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.4148.1.S2_a_at     

Putative homologies in rice

Putative homologies in arabidopsis