Browse Element(s) Details


OsAffx.28096.1.S1_at

Description tigr:9634.m04281
TID=OsAffx.28096.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to AY065011 AT5g13210T31B5_30
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4424011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g44210Os.46083.1.S1_a_at11/116+26664154..26668595protein phosphatase type-2C, putative, expressed
LOC_Os06g44220Os.55687.1.S1_at1/116+26675856..26676198Uncharacterized protein family protein
LOC_Os06g44230Os.4148.1.S2_a_at11/116+26679172..26689052DNA-directed RNA polymerase 3, chloroplast precursor, putative, expressed
LOC_Os06g44240OsAffx.28096.1.S1_at11/116+26689717..26691642hypothetical protein
LOC_Os06g44250Os.55671.1.S1_at10/116+26692491..26695436Haemolysin-III related family protein, expressed
LOC_Os06g44250OsAffx.15962.1.S1_at2/116+26692491..26695436Haemolysin-III related family protein, expressed
LOC_Os06g44260OsAffx.15920.1.S1_at11/116+26697965..26699045RmlD substrate binding domain containing protein, expressed
LOC_Os06g44270Os.53321.1.S1_at11/116+26707020..26708889expressed protein
LOC_Os06g44270OsAffx.20617.1.A1_x_at1/116+26707020..26708889expressed protein
LOC_Os06g44280Os.18683.1.S1_at11/116+26713871..26716573retrotransposon protein, putative, Ty3-gypsy subclass, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28096.1.S1_at--202--5771Chr06:26691127..26691151 (25 bp)
GACGAGCCGTGGCACCACCGTGTCA
LOC_Os06g44240
OsAffx.28096.1.S1_at--1056--1771Chr06:26691143..26691167 (25 bp)
ACCGTGTCATCACCTTCAGCGAACG
LOC_Os06g44240
OsAffx.28096.1.S1_at--1043--9031Chr06:26691176..26691200 (25 bp)
TGCACCACATCAAAGGCGAGACCCT
LOC_Os06g44240
OsAffx.28096.1.S1_at--385--2071Chr06:26691182..26691206 (25 bp)
ACATCAAAGGCGAGACCCTGTACGA
LOC_Os06g44240
OsAffx.28096.1.S1_at--472--6211Chr06:26691391..26691415 (25 bp)
GAGGCGATCACGAGGAAGTTCAACG
LOC_Os06g44240
OsAffx.28096.1.S1_at--861--4051Chr06:26691401..26691425 (25 bp)
CGAGGAAGTTCAACGAGGCCGGCTA
LOC_Os06g44240
OsAffx.28096.1.S1_at--619--6711Chr06:26691450..26691474 (25 bp)
GTTCTGGAACCTGAGGGACTCGTGC
LOC_Os06g44240
OsAffx.28096.1.S1_at--711--1431Chr06:26691530..26691554 (25 bp)
AGAACATGCTCAAGCTGTTCCTCAG
LOC_Os06g44240
OsAffx.28096.1.S1_at--553--9091Chr06:26691536..26691560 (25 bp)
TGCTCAAGCTGTTCCTCAGCGGCGG
LOC_Os06g44240
OsAffx.28096.1.S1_at--47--3711Chr06:26691561..26691585 (25 bp)
CTACGAGAAGATGACGCCGCGGGCC
LOC_Os06g44240
OsAffx.28096.1.S1_at--688--4471Chr06:26691583..26691607 (25 bp)
GCCGTCATGGAGAGGGCCATTTCCG
LOC_Os06g44240
Target Sequence 
GACGAGCCGTGGCACCACCGTGTCATCACCTTCAGCGAACGCCCCCAGCTGCACCACATCAAAGGCGAGACCCTGTACGA
GAAGGAGGAGTTCATCCGCGAGATGGAGTGGGGCTTCAACACCGACCTCCAGGCGGTGTTCGACCAGCTGCTCCACGTCG
CCGTCTCCGGCAACCTGCCACCGGAGCGGATGGTGAAGAAGGTGTTCGTGTTCAGCGACATGGAGTTCGACCAGGCGTCG
TCAAGGGCATGGGAGACCGACTACGAGGCGATCACGAGGAAGTTCAACGAGGCCGGCTACGGCGGCGCGATCCCGGAGGT
GGTGTTCTGGAACCTGAGGGACTCGTGCTCCGTCCCGGTGACCGGGAACAAGAAGGGGGTGGCGCTGGTGAGCGGCTTCT
CCAAGAACATGCTCAAGCTGTTCCTCAGCGGCGGCTACGAGAAGATGACGCCGCGGGCCGTCATGGAGAGGGCCATTTCC
G

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28096.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis