Browse Element(s) Details


OsAffx.15920.1.S1_at

Description tigr:9634.m04284
TID=OsAffx.15920.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=NAD dependent epimerasedehydratase family
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4426011/11RmlD substrate binding domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g44220Os.55687.1.S1_at1/116+26675856..26676198Uncharacterized protein family protein
LOC_Os06g44230Os.4148.1.S2_a_at11/116+26679172..26689052DNA-directed RNA polymerase 3, chloroplast precursor, putative, expressed
LOC_Os06g44240OsAffx.28096.1.S1_at11/116+26689717..26691642hypothetical protein
LOC_Os06g44250Os.55671.1.S1_at10/116+26692491..26695436Haemolysin-III related family protein, expressed
LOC_Os06g44250OsAffx.15962.1.S1_at2/116+26692491..26695436Haemolysin-III related family protein, expressed
LOC_Os06g44260OsAffx.15920.1.S1_at11/116+26697965..26699045RmlD substrate binding domain containing protein, expressed
LOC_Os06g44270Os.53321.1.S1_at11/116+26707020..26708889expressed protein
LOC_Os06g44270OsAffx.20617.1.A1_x_at1/116+26707020..26708889expressed protein
LOC_Os06g44280Os.18683.1.S1_at11/116+26713871..26716573retrotransposon protein, putative, Ty3-gypsy subclass, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006005biological_processL-fucose biosynthesis
GO:0009225biological_processnucleotide-sugar metabolism
GO:0042350biological_processGDP-L-fucose biosynthesis
GO:0003824molecular_functioncatalytic activity
GO:0047918molecular_functionGDP-mannose 3,5-epimerase activity
GO:0050577molecular_functionGDP-L-fucose synthase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15920.1.S1_at--226--8091Chr06:26698494..26698518 (25 bp)
GGAGCGAGTGGTACGCCATCCCGAA
LOC_Os06g44260
OsAffx.15920.1.S1_at--1064--6111Chr06:26698489..26698513 (25 bp)
GAGTGGTACGCCATCCCGAAGATCG
LOC_Os06g44260
OsAffx.15920.1.S1_at--1012--7491Chr06:26698487..26698511 (25 bp)
GTGGTACGCCATCCCGAAGATCGCC
LOC_Os06g44260
OsAffx.15920.1.S1_at--40--9951Chr06:26698483..26698507 (25 bp)
TACGCCATCCCGAAGATCGCCGGGA
LOC_Os06g44260
OsAffx.15920.1.S1_at--104--3231Chr06:26698457..26698481 (25 bp)
CAAGATGTGCCAGGCGGTACGCGCC
LOC_Os06g44260
OsAffx.15920.1.S1_at--762--9951Chr06:26698440..26698464 (25 bp)
TACGCGCCGAGTACGGCTTGGACGC
LOC_Os06g44260
OsAffx.15920.1.S1_at--12--8391Chr06:26698406..26698430 (25 bp)
GGCGCCGAACAACCTGTACGGGCCG
LOC_Os06g44260
OsAffx.15920.1.S1_at--955--8831Chr06:26698338..26698362 (25 bp)
TGATCCGGCGGTTCCACCGCGCGAA
LOC_Os06g44260
OsAffx.15920.1.S1_at--680--6691Chr06:26698328..26698352 (25 bp)
GTTCCACCGCGCGAAGCTCGAGGGC
LOC_Os06g44260
OsAffx.15920.1.S1_at--469--7651Chr06:26698263..26698287 (25 bp)
GGGAGTTCACCCACGTGGACGACCT
LOC_Os06g44260
OsAffx.15920.1.S1_at--542--8091Chr06:26698031..26698055 (25 bp)
GGAGCCGAGGGTGGCGCTGCGCGAC
LOC_Os06g44260
Target Sequence 
GGAGCGAGTGGTACGCCATCCCGAAGATCGCCGGGATCAAGATGTGCCAGGCGGTACGCGCCGAGTACGGCTTGGACGCC
ATCGCGGCGGCGCCGAACAACCTGTACGGGCCGCGCCACCCGTTCCCGCCGGAACACTCCCACGTCATCCCGGCGCTGAT
CCGGCGGTTCCACCGCGCGAAGCTCGAGGGCGCCGGCGAGGTGGCGGTGTGGGGCAGCGGCGCGGCGGCGCGGGAGTTCA
CCCACGTGGACGACCTCGCGGAGGCGGTGGTGGTGCTGATGGAGAGGTACTCCGGGGAGGAGCACGTGAACGTGGGGAGC
GGGGAGGAGGTGACGGTGAGGGAGCTCGCGGAGGCGGTGAGGGGGGTGGTCGGGTACGAGGGGGTGGTGGCGTGGGACGC
GGCGCGGCCGGAGGGGGTGGCGCGGCGGGTGGTGGACAGCGGGAGGATGAGGAAGCTGGGGTGGGAGCCGAGGGTGGCGC
TGCGCGAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15920.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis