Browse Element(s) Details


Os.55687.1.S1_at

Description gb:AK108564.1
DB_XREF= gi:32993773
TID=Os.55687.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.55687 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-145-C08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-145-C08, full insert sequence.
FL= gb:AK108564.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g442201/11Uncharacterized protein family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g44170Os.11290.1.S1_at10/116+26649154..26651373NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os06g44180Os.51814.1.S1_at11/116+26651927..26658234NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os06g44190NANA6+26659030..26659360hypothetical protein
LOC_Os06g44200Os.9467.1.S1_at11/116+26660041..26663598expressed protein
LOC_Os06g44210Os.46083.1.S1_a_at11/116+26664154..26668595protein phosphatase type-2C, putative, expressed
LOC_Os06g44220Os.55687.1.S1_at1/116+26675856..26676198Uncharacterized protein family protein
LOC_Os06g44230Os.4148.1.S2_a_at11/116+26679172..26689052DNA-directed RNA polymerase 3, chloroplast precursor, putative, expressed
LOC_Os06g44240OsAffx.28096.1.S1_at11/116+26689717..26691642hypothetical protein
LOC_Os06g44250Os.55671.1.S1_at10/116+26692491..26695436Haemolysin-III related family protein, expressed
LOC_Os06g44250OsAffx.15962.1.S1_at2/116+26692491..26695436Haemolysin-III related family protein, expressed
LOC_Os06g44260OsAffx.15920.1.S1_at11/116+26697965..26699045RmlD substrate binding domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009409biological_processresponse to cold
GO:0042538biological_processhyperosmotic salinity response
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.55687.1.S1_at--304--9291Chr06:26676118..26676142 (25 bp)
TCCGTCTGGGTCGTCATCCTCAAGA
LOC_Os06g44220
Os.55687.1.S1_at--1081--4371Chr06:26676215..26676239 (25 bp)
GCCAACGGCCGGTGAAATTCAGTTA
NONE
Os.55687.1.S1_at--788--31Chr06:26676244..26676268 (25 bp)
ATTGGTCGTTGAGCGTTTGCATAAT
NONE
Os.55687.1.S1_at--199--4851NONE
GAATAGTGGTTGGTTCGGGCCTCAC
NONE
Os.55687.1.S1_at--18--3351Chr06:26676371..26676395 (25 bp)
CACGGCCTCCTGATTGTAGCAATGA
NONE
Os.55687.1.S1_at--750--8752Chr06:26676400..26676424 (25 bp)
TGTACTGTTCTTTGTTGGTTCTTCT
NONE
Os.55687.1.S1_at--899--8811Chr06:26676412..26676436 (25 bp)
TGTTGGTTCTTCTTATTTTTCTTCT
NONE
Os.55687.1.S1_at--992--10311Chr06:26676429..26676453 (25 bp)
TTTCTTCTTCATTCGACGGGTTTGT
NONE
Os.55687.1.S1_at--1018--10771Chr06:26676464..26676488 (25 bp)
TTGTTTAGATTGTTCGCCATGCGGC
NONE
Os.55687.1.S1_at--446--4691Chr06:26676484..26676508 (25 bp)
GCGGCATTGCGGCATGCTGTATAAA
NONE
Os.55687.1.S1_at--180--10071Chr06:26676521..26676545 (25 bp)
TAGTGGGTTGGTCGATTCTTGTTTT
NONE
Target Sequence 
TCCGTCTGGGTCGTCATCCTCAAGACGCCGCCGGAGCCGCCGGGGATCGACGGGGAGCGGCCGTACTACATCCTCGCCTG
ATCGACCACGCACACACGCCAACGGCCGGTGAAATTCAGTTAGGTAATTGGTCGTTGAGCGTTTGCATAATCAAATTACT
CTTCTAGCTGTAATGATATTGCATTAGTATACTATGTGGCGATTGGGAAAAGCTGTAGCTAGTAGTTAGTGGAATAGTGG
TTGGTTCGGGCCTCACGGCCTCCTGATTGTAGCAATGATTATTGTACTGTTCTTTGTTGGTTCTTCTTATTTTTCTTCTT
CATTCGACGGGTTTGTGCCTTTGTGGTTGTTTAGATTGTTCGCCATGCGGCATTGCGGCATGCTGTATAAATTGTAAAAT
ATATAGTGGGTTGGTCGATTCTTGTTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.55687.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis