Browse Element(s) Details


Os.11290.1.S1_at

Description gb:AK065812.1
DB_XREF= gi:32975830
TID=Os.11290.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.11290 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013038A03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013038A03, full insert sequence.
FL= gb:AK065812.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4417010/11NAD dependent epimerase/dehydratase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g44140Os.5344.1.S1_at11/116+26630944..26634379Endomembrane protein 70 containing protein, expressed
LOC_Os06g44144Os.8897.1.S1_at11/116+26633843..26634379expressed protein
LOC_Os06g44150Os.11134.1.S1_at11/116+26634666..26638723magnesium transporter CorA-like family protein, putative, expressed
LOC_Os06g44160Os.34316.1.S1_at11/116+26645327..26646796DnaJ domain containing protein, expressed
LOC_Os06g44160Os.47474.1.S1_x_at11/116+26645327..26646796DnaJ domain containing protein, expressed
LOC_Os06g44160Os.47474.1.S1_at9/116+26645327..26646796DnaJ domain containing protein, expressed
LOC_Os06g44170Os.11290.1.S1_at10/116+26649154..26651373NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os06g44180Os.51814.1.S1_at11/116+26651927..26658234NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os06g44190NANA6+26659030..26659360hypothetical protein
LOC_Os06g44200Os.9467.1.S1_at11/116+26660041..26663598expressed protein
LOC_Os06g44210Os.46083.1.S1_a_at11/116+26664154..26668595protein phosphatase type-2C, putative, expressed
LOC_Os06g44220Os.55687.1.S1_at1/116+26675856..26676198Uncharacterized protein family protein

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Gene Ontology Classification
GO idTypeName
GO:0009718biological_processanthocyanin biosynthesis
GO:0009809biological_processlignin biosynthesis
GO:0009813biological_processflavonoid biosynthesis
GO:0009964biological_processnegative regulation of flavonoid biosynthesis
GO:0042406cellular_componentextrinsic to endoplasmic reticulum membrane
GO:0004022molecular_functionalcohol dehydrogenase activity
GO:0009985molecular_functiondihydroflavonol(thiole) lyase activity
GO:0016491molecular_functionoxidoreductase activity
GO:0016614molecular_functionoxidoreductase activity, acting on CH-OH group of donors
GO:0045551molecular_functioncinnamyl-alcohol dehydrogenase activity
GO:0045552molecular_functiondihydrokaempferol 4-reductase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11290.1.S1_at--130--4071Chr06:26649435..26649459 (25 bp)
CGAGGCTGGGTTACATCGACGCAGC
LOC_Os06g44170
Os.11290.1.S1_at--1029--1571Chr06:26649408..26649432 (25 bp)
AGCTCAGGCCGCAGGAAGGATGAAT
LOC_Os06g44170
Os.11290.1.S1_at--411--831Chr06:26649356..26649380 (25 bp)
ATGGATGATATTTGTTCGGTTTTGA
LOC_Os06g44170
Os.11290.1.S1_at--778--7431Chr06:26649320..26649344 (25 bp)
GTGTTTGTTTGTAATCTCATGTGTT
LOC_Os06g44170
Os.11290.1.S1_at--470--9631Chr06:26649304..26649328 (25 bp)
TCATGTGTTCTGAATACCTCTCTCA
LOC_Os06g44170
Os.11290.1.S1_at--434--751Chr06:26649280..26649304 (25 bp)
ATGTATCACATGACGCATTTCTGCG
LOC_Os06g44170
Os.11290.1.S1_at--65--4131Chr06:26649267..26649291 (25 bp)
CGCATTTCTGCGTCAGAGAACGATA
LOC_Os06g44170
Os.11290.1.S1_at--393--2671Chr06:26649200..26649224 (25 bp)
AAGCGTGTTTCATTCGGTAATTCGG
LOC_Os06g44170
Os.11290.1.S1_at--111--7831Chr06:26649185..26649209 (25 bp)
GGTAATTCGGGCTAATTTGCTATTG
LOC_Os06g44170
Os.11290.1.S1_at--222--4871Chr06:26649167..26649191 (25 bp)
GCTATTGTTAGCACAAGCCTGAACT
LOC_Os06g44170
Os.11290.1.S1_at--980--2651Chr06:26649153..26649177 (25 bp)
AAGCCTGAACTGGTATTACCATTTA
NONE
Target Sequence 
CGAGGCTGGGTTACATCGACGCAGCCAAGCTCAGGCCGCAGGAAGGATGAATCTGCTACAGATTTGCAGGATGAAGAAGA
TGGATGATATTTGTTCGGTTTTGAACAAGTTTTTNGTGTTTGTTTGTAATCTCATGTGTTCTGAATACCTCTCTCATGTA
TCACATGACGCATTTCTGCGTCAGAGAACGATATTAATAAGTACTCCGTGGAGCTCGCTAGGCANNNNANNNANNAAGCG
TGTTTCATTCGGTAATTCGGGCTAATTTGCTATTGTTAGCACAAGCCTGAACTGGTATTACCATTTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11290.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis