Browse Element(s) Details


Os.5344.1.S1_at

Description gb:AK066545.1
DB_XREF= gi:32976563
TID=Os.5344.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.5344 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013069A19, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013069A19, full insert sequence.
FL= gb:AK066545.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4414011/11Endomembrane protein 70 containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g44120NANA6+26606364..26606890retrotransposon protein, putative, unclassified
LOC_Os06g44130NANA6+26607733..26609425retrotransposon protein, putative, unclassified
LOC_Os06g44140Os.5344.1.S1_at11/116+26630944..26634379Endomembrane protein 70 containing protein, expressed
LOC_Os06g44144Os.8897.1.S1_at11/116+26633843..26634379expressed protein
LOC_Os06g44150Os.11134.1.S1_at11/116+26634666..26638723magnesium transporter CorA-like family protein, putative, expressed
LOC_Os06g44160Os.34316.1.S1_at11/116+26645327..26646796DnaJ domain containing protein, expressed
LOC_Os06g44160Os.47474.1.S1_x_at11/116+26645327..26646796DnaJ domain containing protein, expressed
LOC_Os06g44160Os.47474.1.S1_at9/116+26645327..26646796DnaJ domain containing protein, expressed
LOC_Os06g44170Os.11290.1.S1_at10/116+26649154..26651373NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os06g44180Os.51814.1.S1_at11/116+26651927..26658234NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os06g44190NANA6+26659030..26659360hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0016021cellular_componentintegral to membrane
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5344.1.S1_at--872--3391Chr06:26633366..26633390 (25 bp)
CAGCTCTGCAGCGAGGACTACGAGT
LOC_Os06g44140
Os.5344.1.S1_at--469--8371Chr06:26633495..26633519 (25 bp)
GGCGTGCTCTACTTCGGCTACATGC
LOC_Os06g44140
Os.5344.1.S1_at--658--10591Chr06:26633576..26633600 (25 bp)
TTCTGGTTCACCAGGCTCATCTACT
LOC_Os06g44140
Os.5344.1.S1_at--152--9291Chr06:26633603..26633627 (25 bp)
TCCGTCAAGATCGACTAGAGCTTAA
LOC_Os06g44140
Os.5344.1.S1_at--1113--5911Chr06:26633620..26633644 (25 bp)
GAGCTTAATTACACTTGCACTTGCA
LOC_Os06g44140
Os.5344.1.S1_at--546--1111Chr06:26633652..26633676 (25 bp)
AGTGTCATTAACGTGCTTGCTCGAG
LOC_Os06g44140
Os.5344.1.S1_at--137--1911Chr06:26633662..26633686 (25 bp)
ACGTGCTTGCTCGAGATACTACTAG
LOC_Os06g44140
Os.5344.1.S1_at--393--8591Chr06:26633727..26633751 (25 bp)
TGGTAATTAGGCTGCTCTCTTATCC
LOC_Os06g44140
Os.5344.1.S1_at--237--7671Chr06:26633765..26633789 (25 bp)
GGGATCTACAGTTTAGTCAAGTTGT
LOC_Os06g44140
Os.5344.1.S1_at--377--2031Chr06:26633790..26633814 (25 bp)
ACTAGTAGCTTTTGATGTGTAATCC
LOC_Os06g44140
Os.5344.1.S1_at--946--10031Chr06:26633857..26633881 (25 bp)
TTTAACCACAGGCATTTTTCAGTTG
LOC_Os06g44140
Target Sequence 
CAGCTCTGCAGCGAGGACTACGAGTGGTGGTGGAGGTCGTACCTCACCGCCGGCTCGTCGGCGCTCTACCTCTTCCTCTA
CGCCGCCTTCTACTTCTTCACCAAGCTCGACATCACCAAGGTCGTCTCCGGCGTGCTCTACTTCGGCTACATGCTCATCG
CCTCCGCCGCCTTCTTCGTCCTCACCGGCACAATCGGCTTCTACGCCTGCTTCTGGTTCACCAGGCTCATCTACTCCTCC
GTCAAGATCGACTAGAGCTTAATTACACTTGCACTTGCATGAATGCAGTGTCATTAACGTGCTTGCTCGAGATACTACTA
GCATGTATAAGAGTTAATTTGTTAATCAGGTCATGATAAATTGGTAATTAGGCTGCTCTCTTATCCCCGGATGCTTCAGG
GGATCTACAGTTTAGTCAAGTTGTACTAGTAGCTTTTGATGTGTAATCCTATATAGTTACATTAAACAAAGTTTTCTGAT
ACAAGTGAAGATTTAACCACAGGCATTTTTCAGTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5344.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis