Browse Element(s) Details


Os.8897.1.S1_at

Description gb:AK107786.1
DB_XREF= gi:32992995
TID=Os.8897.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.8897 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-133-C12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-133-C12, full insert sequence.
FL= gb:AK107786.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4414411/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g44130NANA6+26607733..26609425retrotransposon protein, putative, unclassified
LOC_Os06g44140Os.5344.1.S1_at11/116+26630944..26634379Endomembrane protein 70 containing protein, expressed
LOC_Os06g44144Os.8897.1.S1_at11/116+26633843..26634379expressed protein
LOC_Os06g44150Os.11134.1.S1_at11/116+26634666..26638723magnesium transporter CorA-like family protein, putative, expressed
LOC_Os06g44160Os.34316.1.S1_at11/116+26645327..26646796DnaJ domain containing protein, expressed
LOC_Os06g44160Os.47474.1.S1_x_at11/116+26645327..26646796DnaJ domain containing protein, expressed
LOC_Os06g44160Os.47474.1.S1_at9/116+26645327..26646796DnaJ domain containing protein, expressed
LOC_Os06g44170Os.11290.1.S1_at10/116+26649154..26651373NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os06g44180Os.51814.1.S1_at11/116+26651927..26658234NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os06g44190NANA6+26659030..26659360hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8897.1.S1_at--711--1811Chr06:26634314..26634338 (25 bp)
AATAGACACCGGAGGCCAGGGTCGC
LOC_Os06g44144
Os.8897.1.S1_at--633--4231Chr06:26634139..26634163 (25 bp)
CCGTCGCCTACTTCATGTTCAAGGG
LOC_Os06g44144
Os.8897.1.S1_at--312--6711Chr06:26634080..26634104 (25 bp)
GTTCGCCGTCCTTAACTAGAAGGAG
LOC_Os06g44144
Os.8897.1.S1_at--517--5311Chr06:26634062..26634086 (25 bp)
GAAGGAGATCGCTTATATCACCTAG
LOC_Os06g44144
Os.8897.1.S1_at--550--10751Chr06:26634021..26634045 (25 bp)
TTGAATAATAATCTCCTCTCCCTTT
LOC_Os06g44144
Os.8897.1.S1_at--221--3711Chr06:26633994..26634018 (25 bp)
CTAGCGGTCGGCATCCATGTATAAA
LOC_Os06g44144
Os.8897.1.S1_at--602--6891Chr06:26633944..26633968 (25 bp)
GTATCCGTTTTATCCATGAACTGTC
LOC_Os06g44144
Os.8897.1.S1_at--577--671Chr06:26633912..26633936 (25 bp)
ATGAACAGAAGTCCTCTCTTTCCTG
LOC_Os06g44144
Os.8897.1.S1_at--1058--10651Chr06:26633893..26633917 (25 bp)
TTCCTGTCATCCCTTGTAACAGTGT
LOC_Os06g44144
Os.8897.1.S1_at--150--7051Chr06:26633878..26633902 (25 bp)
GTAACAGTGTCATTTCGATTTCAAC
LOC_Os06g44144
Os.8897.1.S1_at--1035--591Chr06:26633847..26633871 (25 bp)
ATGCCTGTGGTTAAATCTTCACTTG
LOC_Os06g44144
Target Sequence 
AATAGACACCGGAGGCCAGGGTCGCCGGCGATCATGTGGCCGGAGAAGATGAGGGCTTGGGCATCCATGGCCGAGGACCC
GCTGAAGCGCGCGTCGGCGGCATCGTCGTCGTCGACGAGCCCNGCTGCGGCGCTACAGCCCGGCCACGCTCGCCGCCGGC
GGCCTCCTCGTCGGCGCCGTCGCCTACTTCATGTTCAAGGGGAAGCAGGGCCAAGGAAGGCAAGGCGACCAACCGGTTCG
CCGTCCTTAACTAGAAGGAGATCGCTTATATCACCTAGCTTATCTAGTAATCGCTTGAATAATAATCTCCTCTCCCTTTG
CCTAGCGGTCGGCATCCATGTATAAACCACTATCTTTGTGCTTAGGTTTATGTATCCGTTTTATCCATGAACTGTCAAAG
AACATGAACAGAAGTCCTCTCTTTCCTGTCATCCCTTGTAACAGTGTCATTTCGATTTCAACTGAAAAATGCCTGTGGTT
AAATCTTCACTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8897.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis