Browse Element(s) Details


Os.11134.1.S1_at

Description gb:AK071905.1
DB_XREF= gi:32981928
TID=Os.11134.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.11134 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013059K22, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013059L22, full insert sequence.
FL= gb:AK099209.1 gb:AK099071.1 gb:AK071905.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4415011/11magnesium transporter CorA-like family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g44140Os.5344.1.S1_at11/116+26630944..26634379Endomembrane protein 70 containing protein, expressed
LOC_Os06g44144Os.8897.1.S1_at11/116+26633843..26634379expressed protein
LOC_Os06g44150Os.11134.1.S1_at11/116+26634666..26638723magnesium transporter CorA-like family protein, putative, expressed
LOC_Os06g44160Os.34316.1.S1_at11/116+26645327..26646796DnaJ domain containing protein, expressed
LOC_Os06g44160Os.47474.1.S1_x_at11/116+26645327..26646796DnaJ domain containing protein, expressed
LOC_Os06g44160Os.47474.1.S1_at9/116+26645327..26646796DnaJ domain containing protein, expressed
LOC_Os06g44170Os.11290.1.S1_at10/116+26649154..26651373NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os06g44180Os.51814.1.S1_at11/116+26651927..26658234NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os06g44190NANA6+26659030..26659360hypothetical protein
LOC_Os06g44200Os.9467.1.S1_at11/116+26660041..26663598expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0030001biological_processmetal ion transport
GO:0016020cellular_componentmembrane
GO:0046873molecular_functionmetal ion transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11134.1.S1_at--491--10631Chr06:26635372..26635396 (25 bp)
TTCGTTGTGATTGACAGCACTCTCA
LOC_Os06g44150
Os.11134.1.S1_at--910--91Chr06:26635065..26635089 (25 bp)
ATTCGAACTTTTACTCACAACTGCA
LOC_Os06g44150
Os.11134.1.S1_at--398--2511Chr06:26635041..26635065 (25 bp)
AACATTTGTTGTCGCCATTTTTGGA
LOC_Os06g44150
Os.11134.1.S1_at--365--10251Chr06:26635001..26635025 (25 bp)
TTTGGGATGAACTTCGAGACCTCAG
LOC_Os06g44150
Os.11134.1.S1_at--1132--5991Chr06:26634986..26635010 (25 bp)
GAGACCTCAGTTTTCAGCATACAGA
LOC_Os06g44150
Os.11134.1.S1_at--585--3011Chr06:26634962..26634986 (25 bp)
AATGCATTCCAGTGGGTGCTCATCA
LOC_Os06g44150
Os.11134.1.S1_at--960--9471Chr06:26634910..26634934 (25 bp)
TCTGCGGATTCCTATGGTTCTTCAA
LOC_Os06g44150
Os.11134.1.S1_at--786--911Chr06:26634878..26634902 (25 bp)
AGGCTGATGCCCCTGTAGATGATCA
LOC_Os06g44150
Os.11134.1.S1_at--278--10771Chr06:26634821..26634845 (25 bp)
TTGTCGTCTACGCTGTTGAGGTACT
LOC_Os06g44150
Os.11134.1.S1_at--1095--2651Chr06:26634789..26634813 (25 bp)
AAGCCTGAATTTCTGCCCGATGTAA
LOC_Os06g44150
Os.11134.1.S1_at--304--2311Chr06:26634707..26634731 (25 bp)
AAAGTTTTCATACCACGAGGCCTCT
LOC_Os06g44150
Target Sequence 
TTCGTTGTGATTGACAGCACTCTCAACAAGCTAACATCGCTGAAGGAGTACATTGATGACACTGAAGATTTTATCAACAT
TCAGTTGGACAATGTTCGGAACCAACTGATCCAATTCGAACTTTTACTCACAACTGCAACATTTGTTGTCGCCATTTTTG
GAGTGGTTGCTGGGATATTTGGGATGAACTTCGAGACCTCAGTTTTCAGCATACAGAATGCATTCCAGTGGGTGCTCATC
ATCACTGGGGTGATCGGCGCTTTCATCTTCTGCGGATTCCTATGGTTCTTCAAGTACAAAAGGCTGATGCCCCTGTAGAT
GATCATAGCATCCATAGGACCAATGAATCAAACTCAATTGTCGTCTACGCTGTTGAGGTACTTGATCAGAAGCCTGAATT
TCTGCCCGATGTAAATTACCATTCTTTTAGAATTCTACAGCATACCTACCAAAGAAATTGAATGAAAAACAAAAGTTTTC
ATACCACGAGGCCTCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11134.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis