Browse Element(s) Details


Os.47474.1.S1_x_at

Description gb:AK107961.1
DB_XREF= gi:32993170
TID=Os.47474.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.47474 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-135-C09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-135-C09, full insert sequence.
FL= gb:AK107961.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4416011/11DnaJ domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g44140Os.5344.1.S1_at11/116+26630944..26634379Endomembrane protein 70 containing protein, expressed
LOC_Os06g44144Os.8897.1.S1_at11/116+26633843..26634379expressed protein
LOC_Os06g44150Os.11134.1.S1_at11/116+26634666..26638723magnesium transporter CorA-like family protein, putative, expressed
LOC_Os06g44160Os.34316.1.S1_at11/116+26645327..26646796DnaJ domain containing protein, expressed
LOC_Os06g44160Os.47474.1.S1_x_at11/116+26645327..26646796DnaJ domain containing protein, expressed
LOC_Os06g44160Os.47474.1.S1_at9/116+26645327..26646796DnaJ domain containing protein, expressed
LOC_Os06g44170Os.11290.1.S1_at10/116+26649154..26651373NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os06g44180Os.51814.1.S1_at11/116+26651927..26658234NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os06g44190NANA6+26659030..26659360hypothetical protein
LOC_Os06g44200Os.9467.1.S1_at11/116+26660041..26663598expressed protein
LOC_Os06g44210Os.46083.1.S1_a_at11/116+26664154..26668595protein phosphatase type-2C, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006457biological_processprotein folding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.47474.1.S1_x_at--1161--9331Chr06:26646312..26646474 (25 bp)
TCGCGCTCACGTATCATCCAGACGT
LOC_Os06g44160
Os.47474.1.S1_x_at--943--971Chr06:26646282..26646306 (25 bp)
AGGAGAGCGATAGCGGCGTCCATTT
LOC_Os06g44160
Os.47474.1.S1_x_at--829--4651Chr06:26646267..26646291 (25 bp)
GCGTCCATTTCCAGCGGATCAACGT
LOC_Os06g44160
Os.47474.1.S1_x_at--830--6451Chr06:26645780..26646275 (25 bp)
GATCAACGTGGCCTACCAGATGGTG
LOC_Os06g44160
Os.47474.1.S1_x_at--975--931Chr06:26645671..26645695 (25 bp)
AGGAACCACCTCAACGACGAAGACG
LOC_Os06g44160
Os.47474.1.S1_x_at--585--8571Chr06:26645638..26645662 (25 bp)
TGGTTCGACGTCTAATCTGAGGATC
LOC_Os06g44160
Os.47474.1.S1_x_at--493--6171Chr06:26645620..26645644 (25 bp)
GAGGATCGTGAATCGCTGCCTGGAC
LOC_Os06g44160
Os.47474.1.S1_x_at--191--3831Chr06:26645605..26645629 (25 bp)
CTGCCTGGACTGACGGGATCAACGA
LOC_Os06g44160
Os.47474.1.S1_x_at--591--3791Chr06:26645563..26645587 (25 bp)
CTCGTTGATCTCCATCATTGATACT
LOC_Os06g44160
Os.47474.1.S1_x_at--486--10351Chr06:26645439..26645463 (25 bp)
TTTATTTGTATGTATGCCTTTCCCC
LOC_Os06g44160
Os.47474.1.S1_x_at--733--10111Chr06:26645334..26645358 (25 bp)
TATGGTCTCTTGATCGAATTACTCG
LOC_Os06g44160
Target Sequence 
TCGCGCTCACGTATCATCCAGACGTTTCAAAGGAGAGCGATAGCGGCGTCCATTTCCAGCGGATCAACGTGGCCTACCAG
ATGGTGATGGGCAACATGAGGGAGGCCGAGGAGAGGCTGGAGTACTGGAGGCTCAAGTACGGCCTCGACGACGAGGACCT
GGACAAGTACAGGAACCACCTCAACGACGAAGACGACGATGAATGGTTCGACGTCTAATCTGAGGATCGTGAATCGCTGC
CTGGACTGACGGGATCAACGAGCACAGATGCAAACCATCTCGTTGATCTCCATCATTGATACTAGAAATTTAATCTTGTT
TATAGCACTGAAAAATCTGTTCATTTGTATGTATGCCTGTATGTAGAACAGTAGTAGTAGCAGCTAGAACTGAAAAAATC
TGTTTATTTGTATGTATGCCTTTCCCCCGGTTTTATTGTAGGGGAAGGGGTACGATTAGACTGATATATATATAACTCAA
TTGGTACTAATTTTGTGCTTATAATTATATGGTCTCTTGATCGAATTACTCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.47474.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis