Browse Element(s) Details


Os.415.1.S1_at

Description gb:U34598.1
DB_XREF= gi:1002916
TID=Os.415.1
CNT=16
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.415 (NCBI UniGene Cluster)
DEF=Oryza sativa cap-binding protein p28 mRNA, complete cds.
PROD=p28
FL= gb:U34598.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3297010/11Eukaryotic translation initiation factor 4E-2, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g32930OsAffx.30647.1.S1_x_at3/1110+16907347..16907616hypothetical protein
LOC_Os10g32930Os.46842.1.S1_at1/1110+16907347..16907616hypothetical protein
LOC_Os10g32940OsAffx.30647.1.S1_x_at11/1110+16914752..16915039expressed protein
LOC_Os10g32950OsAffx.20261.1.S1_at11/1110+16918861..16920479retrotransposon protein, putative, LINE subclass
LOC_Os10g32960Os.46065.1.S1_at11/1110+16921376..16926192Pex2/Pex12 amino terminal region family protein, expressed
LOC_Os10g32960Os.46065.2.S1_x_at9/1110+16921376..16926192Pex2/Pex12 amino terminal region family protein, expressed
LOC_Os10g32970Os.415.1.S1_at10/1110+16928803..16932188Eukaryotic translation initiation factor 4E-2, putative, expressed
LOC_Os10g32980Os.3206.1.S1_at11/1110+16932660..16937186Cellulose synthase A catalytic subunit 4, putative, expressed
LOC_Os10g32990Os.46117.1.S1_at10/1110+16937863..16943228Leucine Rich Repeat family protein, expressed
LOC_Os10g32990Os.8923.1.A1_at2/1110+16937863..16943228Leucine Rich Repeat family protein, expressed
LOC_Os10g32990OsAffx.30096.1.S1_x_at1/1110+16937863..16943228Leucine Rich Repeat family protein, expressed
LOC_Os10g32990Os.10728.1.S1_at1/1110+16937863..16943228Leucine Rich Repeat family protein, expressed
LOC_Os10g33000OsAffx.20354.1.S1_at2/1110+16947555..16950486retrotransposon protein, putative, unclassified
LOC_Os10g33000Os.46995.1.S1_x_at1/1110+16947555..16950486retrotransposon protein, putative, unclassified
LOC_Os10g33010NANA10+16950816..16956937retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0006413biological_processtranslational initiation
GO:0009615biological_processresponse to virus
GO:0005634cellular_componentnucleus
GO:0005730cellular_componentnucleolus
GO:0005737cellular_componentcytoplasm
GO:0000339molecular_functionRNA cap binding
GO:0000340molecular_functionRNA 7-methylguanosine cap binding
GO:0003723molecular_functionRNA binding
GO:0003743molecular_functiontranslation initiation factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.415.1.S1_at--408--931Chr10:16930244..16930268 (25 bp)
AGGAAGACCACCCTTGAGAACATGT
LOC_Os10g32970
Os.415.1.S1_at--932--791Chr10:16930265..16930418 (25 bp)
ATGTGGCTTGAAACGCTGATGGCTC
LOC_Os10g32970
Os.415.1.S1_at--607--1231Chr10:16930459..16930483 (25 bp)
AGTTGTTGCTAGTGTCCGCCAGAGA
LOC_Os10g32970
Os.415.1.S1_at--474--2691Chr10:16930490..16930514 (25 bp)
AAGCTTGCATTGTGGACTAGGACTG
LOC_Os10g32970
Os.415.1.S1_at--2--8131Chr10:16930509..16930533 (25 bp)
GGACTGCCAGCAATGAAGCCGTTCA
LOC_Os10g32970
Os.415.1.S1_at--981--9851NONE
TACAGCTTCCATGATGACGCCAAGA
NONE
Os.415.1.S1_at--259--1691Chr10:16931694..16931718 (25 bp)
AGCCTCAGCTAGTGTTGTTGTCCGA
LOC_Os10g32970
Os.415.1.S1_at--1051--3111Chr10:16931722..16931746 (25 bp)
AATTTTTCCGACCTATTGTGTTGCT
LOC_Os10g32970
Os.415.1.S1_at--1137--31Chr10:16931736..16931760 (25 bp)
ATTGTGTTGCTTTCCTCTCTGATAG
LOC_Os10g32970
Os.415.1.S1_at--698--6151Chr10:16931787..16931811 (25 bp)
GAGGAGTTTGTACGCCACTTAATTT
LOC_Os10g32970
Os.415.1.S1_at--389--971Chr10:16931839..16931863 (25 bp)
AGGAGCCATGGCATTGCGATCTGCT
LOC_Os10g32970
Target Sequence 
AGGAAGACCACCCTTGAGAACATGTGGCTTGAAACGCTGATGGCTCTGATTGGAGAGCAGTTTGATGAAAGTGAGGAAAT
TTGTGGAGTTGTTGCTAGTGTCCGCCAGAGAGGAGACAAGCTTGCATTGTGGACTAGGACTGCCAGCAATGAAGCCGTTC
AGGTAAACATTGGCAAGAAATGGAAGGAGATTGTTGACTACAATGATAAGATGGTCTACAGCTTCCATGATGACGCCAAG
AGGGAGAAACCAAGCAGAGGTGGACGGTACAACGTGTAAGTCACCGCAAAACGTTGCAGCTTGGATAGTGGCCATCGAGT
GGTGTGCCGATACCGGCGCCTGTTCTTTACAGCCTCAGCTAGTGTTGTTGTCCGAGGCAATTTTTCCGACCTATTGTGTT
GCTTTCCTCTCTGATAGCTTATGGTAAAAGATACAAAGATGTTGAGGAGTTTGTACGCCACTTAATTTTGCTCGTAACAT
ACATTGACAATCAAGAGGAGCCATGGCATTGCGATCTGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.415.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis