Browse Element(s) Details


Os.4160.1.S1_at

Description gb:AK069244.1
DB_XREF= gi:32979268
TID=Os.4160.1
CNT=19
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.4160 (NCBI UniGene Cluster)
UG_TITLE=MRNA for beta-1,3-glucanase, partial cds, clone:R0989
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023011M23, full insert sequence.
FL= gb:AK069244.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4161011/11Glucan endo-1,3-beta-glucosidase GVI precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g41580Os.27028.1.A1_at2/115+24263999..24270810Calcium-transporting ATPase 4, plasma membrane-type, putative, expressed
LOC_Os05g41590Os.11570.1.S1_s_at11/115+24274702..24277906Glycerol-3-phosphate dehydrogenase, putative, expressed
LOC_Os05g41590Os.11570.1.S1_at11/115+24274702..24277906Glycerol-3-phosphate dehydrogenase, putative, expressed
LOC_Os05g41590Os.35559.1.S1_at6/115+24274702..24277906Glycerol-3-phosphate dehydrogenase, putative, expressed
LOC_Os05g41599NANA5+24279361..24279781NA
LOC_Os05g41610Os.4160.1.S1_at11/115+24288010..24291479Glucan endo-1,3-beta-glucosidase GVI precursor, putative, expressed
LOC_Os05g41620Os.14205.1.S1_at11/115+24291803..24293628expressed protein
LOC_Os05g41630OsAffx.15060.1.S1_at11/115+24293707..24294697expressed protein
LOC_Os05g41640Os.9261.1.A1_at11/115+24295444..24298321Phosphoglycerate kinase, chloroplast precursor, putative, expressed
LOC_Os05g41650NANA5+24299227..24299556hypothetical protein
LOC_Os05g41660OsAffx.4591.1.S1_at11/115+24299974..24301290ICE-like protease p20 domain containing protein, expressed
LOC_Os05g41670Os.5532.1.S1_at11/115+24301696..24304131latex-abundant protein, putative, expressed
LOC_Os05g41680OsAffx.31069.1.S1_x_at1/115+24305904..24307684retrotransposon protein, putative, unclassified
LOC_Os05g41690Os.28943.1.S1_x_at3/115+24308459..24311668retrotransposon protein, putative, unclassified
LOC_Os05g41700NANA5+24312289..24317919retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0009627biological_processsystemic acquired resistance
GO:0004338molecular_functionglucan 1,3-beta-glucosidase activity
GO:0004553molecular_functionhydrolase activity, hydrolyzing O-glycosyl compounds
GO:0008810molecular_functioncellulase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.4160.1.S1_at--802--8351Chr05:24290935..24290959 (25 bp)
GGCGGCGTGACATACACCAACATGT
LOC_Os05g41610
Os.4160.1.S1_at--147--4251Chr05:24291160..24291184 (25 bp)
CCGGTGGAGACGTACCTGTTCGCCA
LOC_Os05g41610
Os.4160.1.S1_at--434--4671Chr05:24291212..24291236 (25 bp)
GCGTGGAGCAGCATTTCGGCCTCTT
LOC_Os05g41610
Os.4160.1.S1_at--909--1651Chr05:24291239..24291263 (25 bp)
AGCCCGACATGACCGAAGTCTACCA
LOC_Os05g41610
Os.4160.1.S1_at--188--2851Chr05:24291254..24291278 (25 bp)
AAGTCTACCATGTCGACTTCGCGGC
LOC_Os05g41610
Os.4160.1.S1_at--1123--2051Chr05:24291269..24291293 (25 bp)
ACTTCGCGGCCTCCAGCTAGATTAG
LOC_Os05g41610
Os.4160.1.S1_at--1073--10432Chr05:24291290..24291314 (25 bp)
TTAGGCCCGGCCCATTTCACATTTC
LOC_Os05g41610
Os.4160.1.S1_at--28--6471Chr05:24291352..24291376 (25 bp)
GATACAGTATTTTCGTAGTTTCGGT
LOC_Os05g41610
Os.4160.1.S1_at--788--10051Chr05:24291367..24291391 (25 bp)
TAGTTTCGGTTCGATCTCATGTCAC
LOC_Os05g41610
Os.4160.1.S1_at--1039--6411Chr05:24291379..24291403 (25 bp)
GATCTCATGTCACCGGTGCTCTGAT
LOC_Os05g41610
Os.4160.1.S1_at--1133--1771Chr05:24291390..24291414 (25 bp)
ACCGGTGCTCTGATTTGGATTCATT
LOC_Os05g41610
Target Sequence 
GGCGGCGTGACATACACCAACATGTTCGACGCGATCGTGGACGCGGCGCACGCGGCGGTGGAGAAGGCGACGGGCGGGCA
GGCGGTGGAGCTGGTGGTGTCGGAGACCGGCTGGCCGTCCGGTGGCGGCGGCGTGGGCGCCACCGTGGAGAACGCGGCGG
CGTACAACAACAACCTGATCCGCCACGTCTCCGGCGGCGCCGGGACGCCGCGGCGGCCGGGGAAGCCGGTGGAGACGTAC
CTGTTCGCCATGTTCAACGAGAACCAGAAGCCCGAGGGCGTGGAGCAGCATTTCGGCCTCTTCCAGCCCGACATGACCGA
AGTCTACCATGTCGACTTCGCGGCCTCCAGCTAGATTAGGCCCGGCCCATTTCACATTTCTTTCTTTCAGCTGCTGCTAC
TATTTTATTATTTGTCGGATACAGTATTTTCGTAGTTTCGGTTCGATCTCATGTCACCGGTGCTCTGATTTGGATTCATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.4160.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis