Browse Element(s) Details


Os.4164.2.S1_a_at

Description gb:AK060316.1
DB_XREF= gi:32970334
TID=Os.4164.2
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.4164 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) HOS66 mRNA, partial cds
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-007-E04, full insert sequence.
FL= gb:AK060316.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0316411/11Homeobox protein HD1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g03120OsAffx.8512.1.S1_at9/113+1290133..1293472transposon protein, putative, Mutator sub-class
LOC_Os03g03130Os.25731.1.S1_at11/113+1296606..1299984Ubiquitin-conjugating enzyme E2 I, putative, expressed
LOC_Os03g03140Os.9314.1.S1_at11/113+1300894..1302829RNA recognition motif family protein, expressed
LOC_Os03g03150Os.6063.1.S1_at11/113+1305742..1309535Fizzy-related protein homolog, putative, expressed
LOC_Os03g03164Os.4164.2.S1_a_at11/113+1318397..1323586Homeobox protein HD1, putative, expressed
LOC_Os03g03180Os.7349.1.S1_at11/113+1324348..1327861Protein of unknown function, DUF614 containing protein, expressed
LOC_Os03g03190OsAffx.3121.1.S1_at11/113+1328923..1329342hypothetical protein
LOC_Os03g03200Os.17325.1.S1_at11/113+1333861..1336527expressed protein
LOC_Os03g03210NANA3+1342173..1346917retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g03220Os.46995.1.S1_x_at1/113+1347247..1350160retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0009416biological_processresponse to light stimulus
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.4164.2.S1_a_at--265--9731Chr03:1322100..1322120 (21 bp)
TCAAGATTGAGCTCAAGCAGGGCTT
LOC_Os03g03164
Os.4164.2.S1_a_at--237--3231Chr03:1322653..1322673 (21 bp)
CAAGCAGGGCTTCAAGTCAAGGATT
LOC_Os03g03164
Os.4164.2.S1_a_at--187--8611Chr03:1322752..1322776 (25 bp)
TGGTGGCAGCAACACTCCAAGTGGC
LOC_Os03g03164
Os.4164.2.S1_a_at--924--1531Chr03:1323053..1323077 (25 bp)
AGCTTGTTGAAGAGACTGGCCTGCA
LOC_Os03g03164
Os.4164.2.S1_a_at--734--1611Chr03:1323116..1323140 (25 bp)
AGCGTAACTGGCACAACAACTCACA
LOC_Os03g03164
Os.4164.2.S1_a_at--704--2011Chr03:1323134..1323158 (25 bp)
ACTCACAGACATCAACCCTTAAATC
LOC_Os03g03164
Os.4164.2.S1_a_at--454--2991Chr03:1323296..1323320 (25 bp)
AATGTATACCTGACGTACTCGCTAA
LOC_Os03g03164
Os.4164.2.S1_a_at--1072--5751Chr03:1323307..1323331 (25 bp)
GACGTACTCGCTAATCAAATCAAAA
LOC_Os03g03164
Os.4164.2.S1_a_at--446--6151Chr03:1323397..1323421 (25 bp)
GAGGTGACAAATTCATGACATACAT
LOC_Os03g03164
Os.4164.2.S1_a_at--1120--9871Chr03:1323417..1323441 (25 bp)
TACATACTAGTCTGACCACTGGCAT
LOC_Os03g03164
Os.4164.2.S1_a_at--865--5851Chr03:1323430..1323454 (25 bp)
GACCACTGGCATATGCGTTGTAATT
LOC_Os03g03164
Target Sequence 
TCAAGATTGAGCTCAAGCAGGGCTTCAAGTCAAGGATTGAGGATGTGAGAGAAGAAATATTGAGGAAGAGGAGGGCAGGA
AAGTTGCCTGGGGACACCACCNCCATACTCAAGCAATGGTGGCAGCAACACTCCAAGTGGCCATACCCCNCGGAGGATGA
TAAGGCAAAGCTTGTTGAAGAGACTGGCCTGCAGCTCAAGCAAATCAACAACTGGTTCATCAATCAGAGAAAGCGTAACT
GGCACAACAACTCACAGACATCAACCCTTAAATCAAAGCGTAAAAGGTAAAGGGCAGAAAAAAATGTATACCTGACGTAC
TCGCTAATCAAATCAAAAGAAGACATGGTGACTCATAAGTAATAAGATCATCTTAAATTGTATATCTAGTTATTAATTAG
TCAGAGGTGACAAATTCATGACATACATACTAGTCTGACCACTGGCATATGCGTTGTAATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.4164.2.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis