Browse Element(s) Details


Os.4167.1.S1_at

Description gb:AK070560.1
DB_XREF= gi:32980584
TID=Os.4167.1
CNT=21
FEA=FLmRNA
TIER=FL+Stack
STK=9
UG=Os.4167 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) mRNA for aspartate aminotransferase, partial cds
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023062F07, full insert sequence.
FL= gb:AK070560.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1411010/11Aspartate aminotransferase, mitochondrial precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g14059Os.13546.1.S1_at11/112+7676811..768750660S ribosomal protein L11-1, putative, expressed
LOC_Os02g14059Os.28346.3.S1_x_at1/112+7676811..768750660S ribosomal protein L11-1, putative, expressed
LOC_Os02g14080NANA2+7689510..7689752hypothetical protein
LOC_Os02g14090OsAffx.11451.6.S1_s_at11/112+7690303..7692133Reticuline oxidase precursor, putative, expressed
LOC_Os02g14090OsAffx.11451.4.S1_x_at1/112+7690303..7692133Reticuline oxidase precursor, putative, expressed
LOC_Os02g14100OsAffx.26082.3.A1_at5/112+7695473..7700292retrotransposon protein, putative, unclassified
LOC_Os02g14110Os.4167.1.S1_at10/112+7706618..7711164Aspartate aminotransferase, mitochondrial precursor, putative, expressed
LOC_Os02g14120Os.50286.1.S1_at11/112+7711096..7715738BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative, expressed
LOC_Os02g14130Os.22834.1.S1_at11/112+7718959..7723686Shaggy-related protein kinase eta, putative, expressed
LOC_Os02g14140OsAffx.24242.4.S1_x_at2/112+7733271..7733966hypothetical protein
LOC_Os02g14140OsAffx.24242.5.S1_x_at1/112+7733271..7733966hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006807biological_processnitrogen compound metabolism
GO:0010150biological_processleaf senescence
GO:0005739cellular_componentmitochondrion
GO:0005829cellular_componentcytosol
GO:0009536cellular_componentplastid
GO:0004069molecular_functionaspartate transaminase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.4167.1.S1_at--260--2931Chr02:7709613..7709637 (25 bp)
AAGGCACTCCGGGAAAATCTCGAAG
LOC_Os02g14110
Os.4167.1.S1_at--790--3031Chr02:7709628..7709652 (25 bp)
AATCTCGAAGGCCTAGGTTCACCAT
LOC_Os02g14110
Os.4167.1.S1_at--416--7891Chr02:7709643..7709667 (25 bp)
GGTTCACCATTGTCATGGGATCACA
LOC_Os02g14110
Os.4167.1.S1_at--1161--3491NONE
CATGGGATCACATCACCAATCAGAT
NONE
Os.4167.1.S1_at--823--8971Chr02:7710366..7710390 (25 bp)
TGAACAGGTGGATCGCTTAACCAAT
LOC_Os02g14110
Os.4167.1.S1_at--864--5231Chr02:7710391..7710415 (25 bp)
GAATACCATATTTACATGACCCGTA
LOC_Os02g14110
Os.4167.1.S1_at--728--791Chr02:7710538..7710562 (25 bp)
ATGTGGCGTATTTGGCTAATGCTAT
LOC_Os02g14110
Os.4167.1.S1_at--1113--3751Chr02:7710597..7710621 (25 bp)
CTCTTCCCTCTTCGGCCAATGAAAT
LOC_Os02g14110
Os.4167.1.S1_at--786--9111Chr02:7710709..7710733 (25 bp)
TGCTGGTGTTTCTCCAACTTCGGAT
LOC_Os02g14110
Os.4167.1.S1_at--711--9271Chr02:7710719..7710743 (25 bp)
TCTCCAACTTCGGATTTTCCCTGTA
LOC_Os02g14110
Os.4167.1.S1_at--1107--10491Chr02:7710803..7710827 (25 bp)
TTCAATCGTCAGATGTTATGCCTGT
LOC_Os02g14110
Target Sequence 
AAGGCACTCCGGGAAAATCTCGAAGGCCTAGGTTCACCATTGTCATGGGATCACATCACCAATCAGATTGGAATGTTCTG
CTACAGTGGGATNACACCTGAACAGGTGGATCGCTTAACCAATGAATACCATATTTACATGACCCGTAATGGCAGAATAA
GCATGGCTGGTGTAACAACAGGAAATGTGGCGTATTTGGCTAATGCTATTCATGAGGTCACTAAAACGAAATGAAGCTAC
TTCCTCTTCCCTCTTCGGCCAATGAAATGAGGCTTGCAAGCGGCGGCGTTTTTTTTTTGGGGGGTGGTCTATTGACCTTT
AAGATGGTTGTACTANAGAAATAATCCAGTGAACATGCTGGTGTTTCTCCAACTTCGGATTTTCCCTGTATGGAGGAGAG
AACTAGAAACCTACCCAATTTTGAGAGCTATAGATGCCGATCCTGTTATTTCAATCGTCAGATGTTATGCCTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.4167.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis