Browse Element(s) Details


Os.427.1.S1_at

Description gb:AB031396.1
DB_XREF= gi:12249030
GEN=OsIRE1
TID=Os.427.1
CNT=21
FEA=FLmRNA
TIER=FL+Stack
STK=10
UG=Os.427 (NCBI UniGene Cluster)
DEF=Oryza sativa mRNA for OsIre1p, complete cds.
PROD=OsIre1p
FL= gb:AB031396.1 gb:AK068617.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g2882011/11Ribonuclease 2-5A family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g28780Os.46306.1.S1_x_at3/117+16845108..16848037transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g28790Os.50313.1.S1_at11/117+16855498..16860933PAP_fibrillin family protein, expressed
LOC_Os07g28800OsAffx.16458.1.S1_at11/117+16861585..16865428DnaJ domain containing protein
LOC_Os07g28810OsAffx.16459.1.S1_at11/117+16867599..16868610expressed protein
LOC_Os07g28820Os.427.1.S1_at11/117+16868774..16873661Ribonuclease 2-5A family protein, expressed
LOC_Os07g28830NANA7+16873884..16875314hypothetical protein
LOC_Os07g28840Os.9542.1.A1_at11/117+16885207..16888668SET domain containing protein, expressed
LOC_Os07g28850OsAffx.28651.1.S1_x_at11/117+16891936..16898511Piwi domain containing protein, expressed
LOC_Os07g28850Os.7338.1.S1_at11/117+16891936..16898511Piwi domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0000910biological_processcytokinesis
GO:0006987biological_processunfolded protein response, activation of signaling protein activity
GO:0000775cellular_componentchromosome, pericentric region
GO:0005634cellular_componentnucleus
GO:0005694cellular_componentchromosome
GO:0005739cellular_componentmitochondrion
GO:0042406cellular_componentextrinsic to endoplasmic reticulum membrane
GO:0004521molecular_functionendoribonuclease activity
GO:0004709molecular_functionMAP kinase kinase kinase activity
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.427.1.S1_at--69--3531Chr07:16872509..16872533 (25 bp)
CATCCTTTCTTTTGGAGCCCTGAGT
LOC_Os07g28820
Os.427.1.S1_at--1016--10851Chr07:16872520..16872544 (25 bp)
TTGGAGCCCTGAGTTGTGCCTTTCA
LOC_Os07g28820
Os.427.1.S1_at--1060--8691Chr07:16872534..16872558 (25 bp)
TGTGCCTTTCATTTCTACGAGATAC
LOC_Os07g28820
Os.427.1.S1_at--159--1732Chr07:16872578..16872602 (25 bp)
ACCAGTGAAACTGATCTCATAGATG
LOC_Os07g28820
Os.427.1.S1_at--742--6411Chr07:16872590..16872614 (25 bp)
GATCTCATAGATGCTTTGGAAGGCA
LOC_Os07g28820
Os.427.1.S1_at--769--10031Chr07:16872654..16872678 (25 bp)
TAGATGCTGCCCTGCTTGCAGACAT
LOC_Os07g28820
Os.427.1.S1_at--909--3711Chr07:16873438..16873462 (25 bp)
CTCGGCGTAGCTGTAACCTGCAGGA
LOC_Os07g28820
Os.427.1.S1_at--274--3831Chr07:16873475..16873499 (25 bp)
CTGCCCTGCCTAGTGTGTACACTAA
LOC_Os07g28820
Os.427.1.S1_at--438--7031Chr07:16873491..16873515 (25 bp)
GTACACTAACACTCTTCTAGCAAAA
LOC_Os07g28820
Os.427.1.S1_at--593--5571Chr07:16873557..16873581 (25 bp)
GAAAGTTCAGCCTGTACATTGTATT
LOC_Os07g28820
Os.427.1.S1_at--806--7011Chr07:16873570..16873594 (25 bp)
GTACATTGTATTCCACAGAATTGTG
LOC_Os07g28820
Target Sequence 
CATCCTTTCTTTTGGAGCCCTGAGTTGTGCCTTTCATTTCTACGAGATACCAGTGACAGAATTGAGAAAACCAGTGAAAC
TGATCTCATAGATGCTTTGGAAGGCATAAATGTTGAAGCATTTGGTAAAAATTGGGGAGAGAAATTAGATGCTGCCCTGC
TTGCAGACATGGGACGTTATAGAAAATATAGTTTTGAGTCCACTCGTGACCTTCTAAGATTGATCAGAAACAAATCAGGA
CATTACAGAGAATTTTCAGATGATCTCAAGGAGCTACTTGGGTCGCTGCCGGAGGGATTTGTTCAGTATTTCTCAAGCCG
ATTCCCAAAGCTGCTAATTAAAGTCTACGAGGTCATGTCCGAGCATTGCAAGGACGAAGAAGCTTTCAGCAAATATTTCC
TTGGAAGCTCGGCGTAGCTGTAACCTGCAGGAGGGGTGAAGGCCCTGCCCTGCCTAGTGTGTACACTAACACTCTTCTAG
CAAAAATGTATGTACATGTGATTTGTACCATATATCATAGGGTAAAGAAAGTTCAGCCTGTACATTGTATTCCACAGAAT
TGTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.427.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis