Browse Element(s) Details


Os.4335.1.S1_at

Description gb:AK059624.1
DB_XREF= gi:32969642
TID=Os.4335.1
CNT=16
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.4335 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-030-H06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-030-H06, full insert sequence.
FL= gb:AK059624.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0377010/11NADH-ubiquinone oxidoreductase B18 subunit family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g03710Os.24766.1.A1_s_at11/113+1631539..1639785RNB-like protein, expressed
LOC_Os03g03710Os.24766.1.A1_at11/113+1631539..1639785RNB-like protein, expressed
LOC_Os03g03710OsAffx.3125.1.S1_at10/113+1631539..1639785RNB-like protein, expressed
LOC_Os03g03720Os.4329.1.S1_at11/113+1640515..1643917Glyceraldehyde-3-phosphate dehydrogenase B, chloroplast precursor, putative, expressed
LOC_Os03g03720Os.10732.1.S1_s_at1/113+1640515..1643917Glyceraldehyde-3-phosphate dehydrogenase B, chloroplast precursor, putative, expressed
LOC_Os03g03730OsAffx.24955.1.S1_s_at11/113+1645808..1647611regulatory protein, putative, expressed
LOC_Os03g03740NANA3+1648147..1648488retrotransposon protein, putative, unclassified
LOC_Os03g03750OsAffx.12725.1.S1_at8/113+1649370..1649778hypothetical protein
LOC_Os03g03760OsAffx.12726.1.S1_at11/113+1651176..1656154myb-like DNA-binding domain, SHAQKYF class family protein, expressed
LOC_Os03g03770Os.4335.1.S1_at10/113+1663864..1667883NADH-ubiquinone oxidoreductase B18 subunit family protein, expressed
LOC_Os03g03790Os.49527.1.S1_at11/113+1684396..1686679acyl-activating enzyme 11, putative, expressed
LOC_Os03g03800NANA3+1689651..1691275hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006120biological_processmitochondrial electron transport, NADH to ubiquinone
GO:0005739cellular_componentmitochondrion
GO:0008137molecular_functionNADH dehydrogenase (ubiquinone) activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.4335.1.S1_at--459--1611Chr03:1667715..1667739 (25 bp)
AGCTGGGCACCTCGAAGCCGCAGAT
LOC_Os03g03770
Os.4335.1.S1_at--559--1291Chr03:1667694..1667718 (25 bp)
AGATCGCGACCCAGGCGGAGATGTC
LOC_Os03g03770
Os.4335.1.S1_at--245--4811Chr03:1667531..1667555 (25 bp)
GCTCGTCATGGAGCGGATGATCCAG
LOC_Os03g03770
Os.4335.1.S1_at--527--6411Chr03:1667117..1667422 (25 bp)
GATCTGCTCTATTCAGGGCTGGTTA
LOC_Os03g03770
Os.4335.1.S1_at--65--5191Chr03:1664058..1664082 (25 bp)
GCAAGGATCGTGGATGCTAGTTCTA
LOC_Os03g03770
Os.4335.1.S1_at--1068--1211Chr03:1664002..1664026 (25 bp)
AGTTAACTGTTGTCTTCTTCTCTCC
LOC_Os03g03770
Os.4335.1.S1_at--237--4451Chr03:1663977..1664001 (25 bp)
GCCTTTACTCCGTTGGTGAGCATCT
LOC_Os03g03770
Os.4335.1.S1_at--226--7771Chr03:1663963..1663987 (25 bp)
GGTGAGCATCTTCGAGTTTCAATAT
LOC_Os03g03770
Os.4335.1.S1_at--579--8171Chr03:1663931..1663955 (25 bp)
GGAACTACCTGTTTATACTCAATGA
LOC_Os03g03770
Os.4335.1.S1_at--474--5811Chr03:1663899..1663923 (25 bp)
GACGCCTTAAAGTTTTGAATGCAAT
LOC_Os03g03770
Os.4335.1.S1_at--383--5191NONE
GCAATGCGTGGACTCTGCATAGGAA
NONE
Target Sequence 
AGCTGGGCACCTCGAAGCCGCAGATCGCGACCCAGGCGGAGATGTCGGAGGCGCGCCTCCCACTGCCCTACCGCGACCAG
TGCGCCCACCTCCTCATCCCCCTCAACAAGTGCCGCGTCGCCGAGTACTACCTCCCCTGGAAGTGCGAGCCCGAGCGCCA
CGCCTACGAGAAGTGCCAGTACGAGCTCGTCATGGAGCGGATGATCCAGATGCAGAAGATCCGCGAGGCGCAGGAGGCCA
AGTCCAAGGGCGCCGCCACCATTGGCGTCCCCCTCATCCCTTCCACCGCCAAGCTCTCCTGATCCCCGCTCCGCTTCGAT
CTGCTCTATTCAGGGCTGGTTATGACAGCACGAAGGACATTGTGCAAGGATCGTGGATGCTAGTTCTATGAACCAAACAT
CTGTTTGAATTTAGCATAAAGTTAACTGTTGTCTTCTTCTCTCCGCCTTTACTCCGTTGGTGAGCATCTTCGAGTTTCAA
TATGAAATAAGGAACTACCTGTTTATACTCAATGACTGAAATGACGCCTTAAAGTTTTGAATGCAATGCGTGGACTCTGC
ATAGGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.4335.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis