Browse Element(s) Details


OsAffx.3125.1.S1_at

Description tigr:9631.m00282
TID=OsAffx.3125.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=RNB-like protein, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0371010/11RNB-like protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g03660Os.2691.1.S1_a_at11/113+1603441..1607849Calcium-dependent protein kinase, isoform 11, putative, expressed
LOC_Os03g03660Os.54519.1.S1_at1/113+1603441..1607849Calcium-dependent protein kinase, isoform 11, putative, expressed
LOC_Os03g03670Os.4324.1.S1_at11/113+1608507..1610088expressed protein
LOC_Os03g03680OsAffx.30403.1.S1_at11/113+1610499..1616535major facilitator superfamily protein, expressed
LOC_Os03g03680OsAffx.30403.1.S1_s_at11/113+1610499..1616535major facilitator superfamily protein, expressed
LOC_Os03g03690Os.53684.1.A1_at10/113+1619997..1623371Phospho-ethanolamine N-methyltransferase family protein, expressed
LOC_Os03g03690OsAffx.12724.1.S1_at10/113+1619997..1623371Phospho-ethanolamine N-methyltransferase family protein, expressed
LOC_Os03g03690Os.10405.1.S1_at1/113+1619997..1623371Phospho-ethanolamine N-methyltransferase family protein, expressed
LOC_Os03g03700Os.4327.1.S1_at11/113+1623489..1627107MLO protein homolog 1, putative, expressed
LOC_Os03g03710Os.24766.1.A1_s_at11/113+1631539..1639785RNB-like protein, expressed
LOC_Os03g03710Os.24766.1.A1_at11/113+1631539..1639785RNB-like protein, expressed
LOC_Os03g03710OsAffx.3125.1.S1_at10/113+1631539..1639785RNB-like protein, expressed
LOC_Os03g03720Os.4329.1.S1_at11/113+1640515..1643917Glyceraldehyde-3-phosphate dehydrogenase B, chloroplast precursor, putative, expressed
LOC_Os03g03720Os.10732.1.S1_s_at1/113+1640515..1643917Glyceraldehyde-3-phosphate dehydrogenase B, chloroplast precursor, putative, expressed
LOC_Os03g03730OsAffx.24955.1.S1_s_at11/113+1645808..1647611regulatory protein, putative, expressed
LOC_Os03g03740NANA3+1648147..1648488retrotransposon protein, putative, unclassified
LOC_Os03g03750OsAffx.12725.1.S1_at8/113+1649370..1649778hypothetical protein
LOC_Os03g03760OsAffx.12726.1.S1_at11/113+1651176..1656154myb-like DNA-binding domain, SHAQKYF class family protein, expressed
LOC_Os03g03770Os.4335.1.S1_at10/113+1663864..1667883NADH-ubiquinone oxidoreductase B18 subunit family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0003723molecular_functionRNA binding
GO:0004540molecular_functionribonuclease activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.3125.1.S1_at--740--8931Chr03:1633294..1633318 (25 bp)
TGACCCATACTTCAACAAGCTTATC
LOC_Os03g03710
OsAffx.3125.1.S1_at--692--4891Chr03:1633276..1633300 (25 bp)
GCTTATCAGGATTTTGGCAACTAGA
LOC_Os03g03710
OsAffx.3125.1.S1_at--591--5031Chr03:1633156..1633180 (25 bp)
GCAGTTTATTTCTGTAGCGGAGACT
LOC_Os03g03710
OsAffx.3125.1.S1_at--106--4691Chr03:1633140..1633164 (25 bp)
GCGGAGACTTGACCTTTTCTGAGTA
LOC_Os03g03710
OsAffx.3125.1.S1_at--767--10311Chr03:1633125..1633149 (25 bp)
TTTCTGAGTATTACCATTATGGCCT
LOC_Os03g03710
OsAffx.3125.1.S1_at--741--10711Chr03:1633101..1633125 (25 bp)
TTGCTGCTTCTCTTTACACACATTT
LOC_Os03g03710
OsAffx.3125.1.S1_at--297--3811NONE
CTCCCCTATTCGCAGATATGCAGAT
NONE
OsAffx.3125.1.S1_at--657--10551Chr03:1632666..1632690 (25 bp)
TTCATAGGTTGTTAGCTGCTGCCCT
LOC_Os03g03710
OsAffx.3125.1.S1_at--1058--1591Chr03:1632653..1632677 (25 bp)
AGCTGCTGCCCTAGAAATTGCCAAA
LOC_Os03g03710
OsAffx.3125.1.S1_at--505--811Chr03:1632609..1632633 (25 bp)
ATGGTCCACAACTTACAGGCGTAGC
LOC_Os03g03710
OsAffx.3125.1.S1_at--304--3491Chr03:1632512..1632618 (25 bp)
CAGGCGTAGCTGACAACTTGAATTA
LOC_Os03g03710
Target Sequence 
TGACCCATACTTCAACAAGCTTATCAGGATTTTGGCAACTAGATGCATGACACAGGCAGTTTATTTCTGTAGCGGAGACT
TGACCTTTTCTGAGTATTACCATTATGGCCTTGCTGCTTCTCTTTACACACATTTCACCTCCCCTATTCGCAGATATGCA
GATGTTATTGTTCATAGGTTGTTAGCTGCTGCCCTAGAAATTGCCAAACTTCCACCCCTCTTTCAGGATGGTCCACAACT
TACAGGCGTAGCTGACAACTTGAATTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.3125.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis