Browse Element(s) Details


Os.2691.1.S1_a_at

Description gb:AF048691.1
DB_XREF= gi:2944384
GEN=CDPK12
TID=Os.2691.1
CNT=24
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.2691 (NCBI UniGene Cluster)
DEF=Oryza sativa calcium dependent protein kinase (CDPK12) mRNA, complete cds.
PROD=calcium dependent protein kinase
FL= gb:AF048691.1 gb:AK066500.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0366011/11Calcium-dependent protein kinase, isoform 11, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g03620OsAffx.13603.1.S1_at11/113+1577054..1580404glycosyl transferase family 48 protein, putative, expressed
LOC_Os03g03630Os.4320.1.S1_at11/113+1586374..1587346expressed protein
LOC_Os03g03640Os.4321.1.S1_at11/113+1588134..1590083expressed protein
LOC_Os03g03650Os.4685.1.S1_at11/113+1590668..1594786DNA polymerase delta small subunit, putative, expressed
LOC_Os03g03660Os.2691.1.S1_a_at11/113+1603441..1607849Calcium-dependent protein kinase, isoform 11, putative, expressed
LOC_Os03g03660Os.54519.1.S1_at1/113+1603441..1607849Calcium-dependent protein kinase, isoform 11, putative, expressed
LOC_Os03g03670Os.4324.1.S1_at11/113+1608507..1610088expressed protein
LOC_Os03g03680OsAffx.30403.1.S1_at11/113+1610499..1616535major facilitator superfamily protein, expressed
LOC_Os03g03680OsAffx.30403.1.S1_s_at11/113+1610499..1616535major facilitator superfamily protein, expressed
LOC_Os03g03690Os.53684.1.A1_at10/113+1619997..1623371Phospho-ethanolamine N-methyltransferase family protein, expressed
LOC_Os03g03690OsAffx.12724.1.S1_at10/113+1619997..1623371Phospho-ethanolamine N-methyltransferase family protein, expressed
LOC_Os03g03690Os.10405.1.S1_at1/113+1619997..1623371Phospho-ethanolamine N-methyltransferase family protein, expressed
LOC_Os03g03700Os.4327.1.S1_at11/113+1623489..1627107MLO protein homolog 1, putative, expressed
LOC_Os03g03710Os.24766.1.A1_s_at11/113+1631539..1639785RNB-like protein, expressed
LOC_Os03g03710Os.24766.1.A1_at11/113+1631539..1639785RNB-like protein, expressed
LOC_Os03g03710OsAffx.3125.1.S1_at10/113+1631539..1639785RNB-like protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0006499biological_processN-terminal protein myristoylation
GO:0005777cellular_componentperoxisome
GO:0005789cellular_componentendoplasmic reticulum membrane
GO:0016020cellular_componentmembrane
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0004685molecular_functioncalcium- and calmodulin-dependent protein kinase activity
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.2691.1.S1_a_at--236--7751Chr03:1606477..1606501 (25 bp)
GGTGTAATCACTTTCGGTGAGCTTA
LOC_Os03g03660
Os.2691.1.S1_a_at--279--2971Chr03:1606557..1606666 (25 bp)
AATGGAAGCGGCACACAACGACAAT
LOC_Os03g03660
Os.2691.1.S1_a_at--648--10411Chr03:1606692..1606716 (25 bp)
TTATTGCTGCAACTCTACCTCTTAA
LOC_Os03g03660
Os.2691.1.S1_a_at--1113--1431Chr03:1606723..1606747 (25 bp)
AGAACGTGAGGAGCACCTGCTGGCA
LOC_Os03g03660
Os.2691.1.S1_a_at--525--3831Chr03:1606739..1606763 (25 bp)
CTGCTGGCAGCTTTTACATATTTTG
LOC_Os03g03660
Os.2691.1.S1_a_at--929--3911Chr03:1607375..1607399 (25 bp)
CGGCCAAATTGACTACGCCGAATTT
LOC_Os03g03660
Os.2691.1.S1_a_at--377--1831Chr03:1607389..1607413 (25 bp)
ACGCCGAATTTGTAGCCATGATGCA
LOC_Os03g03660
Os.2691.1.S1_a_at--969--3391Chr03:1607417..1607441 (25 bp)
CAGCAACGTTGGACTAGGGTGGCAA
LOC_Os03g03660
Os.2691.1.S1_a_at--156--5991Chr03:1607473..1607497 (25 bp)
GAGACGCACCTCAAGTACATTGATG
LOC_Os03g03660
Os.2691.1.S1_a_at--290--9531Chr03:1607523..1607547 (25 bp)
TCTCTTGTCCATTCATTCTTCACTA
LOC_Os03g03660
Os.2691.1.S1_a_at--831--1791Chr03:1607547..1607571 (25 bp)
ACCCAATTCGGGTCTGTGACTTGTA
LOC_Os03g03660
Target Sequence 
GGTGTAATCACTTTCGGTGAGCTTAGAGAAGGTTTAAGAAGATTTGGCGCTGAATTTAAGGATACAGAGATTGGTGATAT
AATGGAAGCGGCACACAACGACAATAATGTAACAATCCATTATGAAGAATTTATTGCTGCAACTCTACCTCTTAACAAGA
TAGAACGTGAGGAGCACCTGCTGGCAGCTTTTACATATTTTGACAAAGATGGGAGTGGTTATATCACANTTGACAAGCTT
CAACGAGCTTGTGGAGAACATAACATGGAGGATTCACTCCTTGAAGAGATTATTTCAGAGGTTGATCAAAACAATGACGG
CCAAATTGACTACGCCGAATTTGTAGCCATGATGCAAGGCAGCAACGTTGGACTAGGGTGGCAAACAATGGAAAGCAGTT
TGAATGTAGCATTAAGAGACGCACCTCAAGTACATTGATGCACGAATGTATAGATTTTGTTCTCTTCTCTTGTCCATTCA
TTCTTCACTACCCAATTCGGGTCTGTGACTTGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.2691.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis