Browse Element(s) Details


Os.4685.1.S1_at

Description gb:AB037900.1
DB_XREF= gi:9188571
GEN=OspolD2
TID=Os.4685.1
CNT=12
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.4685 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) OspolD2 mRNA for OsPol delta small subunit, complete cds.
PROD=OsPol delta small subunit
FL= gb:AB037900.1 gb:AK067991.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0365011/11DNA polymerase delta small subunit, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g03610Os.14984.1.S1_a_at11/113+1560521..15741791,3-beta-glucan synthase component family protein, expressed
LOC_Os03g03610Os.54124.1.S1_at1/113+1560521..15741791,3-beta-glucan synthase component family protein, expressed
LOC_Os03g03620OsAffx.13603.1.S1_at11/113+1577054..1580404glycosyl transferase family 48 protein, putative, expressed
LOC_Os03g03630Os.4320.1.S1_at11/113+1586374..1587346expressed protein
LOC_Os03g03640Os.4321.1.S1_at11/113+1588134..1590083expressed protein
LOC_Os03g03650Os.4685.1.S1_at11/113+1590668..1594786DNA polymerase delta small subunit, putative, expressed
LOC_Os03g03660Os.2691.1.S1_a_at11/113+1603441..1607849Calcium-dependent protein kinase, isoform 11, putative, expressed
LOC_Os03g03660Os.54519.1.S1_at1/113+1603441..1607849Calcium-dependent protein kinase, isoform 11, putative, expressed
LOC_Os03g03670Os.4324.1.S1_at11/113+1608507..1610088expressed protein
LOC_Os03g03680OsAffx.30403.1.S1_at11/113+1610499..1616535major facilitator superfamily protein, expressed
LOC_Os03g03680OsAffx.30403.1.S1_s_at11/113+1610499..1616535major facilitator superfamily protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.4685.1.S1_at--157--5611Chr03:1591853..1591877 (25 bp)
GACAAGGATCCTTTTCTCGTTGAAA
LOC_Os03g03650
Os.4685.1.S1_at--191--6651Chr03:1591835..1591859 (25 bp)
GTTGAAAGCTGTCCCCATGTTTACT
LOC_Os03g03650
Os.4685.1.S1_at--681--1111Chr03:1591686..1591710 (25 bp)
AGTGAGGCTGATCTGCATTCCAAGA
LOC_Os03g03650
Os.4685.1.S1_at--672--6111Chr03:1591222..1591246 (25 bp)
GAGTGCAGCACGTTGAGTTTCTCAA
LOC_Os03g03650
Os.4685.1.S1_at--971--6071Chr03:1591208..1591232 (25 bp)
GAGTTTCTCAACAAGCTTCGATGCT
LOC_Os03g03650
Os.4685.1.S1_at--474--5851Chr03:1591182..1591206 (25 bp)
GACCATGCTCTACTTGTCTGGAGTG
LOC_Os03g03650
Os.4685.1.S1_at--161--9111Chr03:1591138..1591162 (25 bp)
TGCTGCTGTGGACATCTTAATCCTG
LOC_Os03g03650
Os.4685.1.S1_at--523--6291Chr03:1591060..1591084 (25 bp)
GATGACCTAGGTTTCTCCAATTAGA
LOC_Os03g03650
Os.4685.1.S1_at--202--6511Chr03:1591029..1591053 (25 bp)
GATATAATTGCCTAAACCTCGATGT
LOC_Os03g03650
Os.4685.1.S1_at--686--2671Chr03:1590958..1590982 (25 bp)
AAGCGTATGCTTCTTTTCTCGGTAT
LOC_Os03g03650
Os.4685.1.S1_at--464--9511Chr03:1590942..1590966 (25 bp)
TCTCGGTATGAGTATCCACAGCTGA
LOC_Os03g03650
Target Sequence 
GACAAGGATCCTTTTCTCGTTGAAAGCTGTCCCCATGTTTACTTCGTCGGGAATCAAGATAAATATGAAACTCAATTATT
GCAAGGGCNAGAAAAACAAAAAGTGAGGCTGATCTGCATTCCAAGATTTTGTGATAGTGGAGTTGCNGTCATGCTCAATT
TGAGGAACTTGGAGTGCAGCACGTTGAGTTTCTCAACAAGCTTCGATGCTTGACCATGCTCTACTTGTCTGGAGTGCAAG
TGAGTTGATGTAGCATGCTGCTGTGGACATCTTAATCCTGAACTGGCGCAGGGTTGTCTAAAGGATGTACTTGTAGTTCT
TTTTTTAGATTGTGATGACCTAGGTTTCTCCAATTAGATGTGTTGATATAATTGCCTAAACCTCGATGTATCAAAAGCTG
AAATAGAGGGTGCACGGTTTGTACTAAACAAAAAGAAGCGTATGCTTCTTTTCTCGGTATGAGTATCCACAGCTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.4685.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis