Browse Element(s) Details


Os.14984.1.S1_a_at

Description gb:AK105008.2
DB_XREF= gi:42821623
TID=Os.14984.1
CNT=19
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.14984 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) Putative glucan synthase (OJ1015F07.18), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-006-G07, full insert sequence.
FL= gb:AK062279.1 gb:AK105008.2
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0361011/111,3-beta-glucan synthase component family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g03560Os.32569.1.S1_at11/113+1532402..1537496FHA domain containing protein, expressed
LOC_Os03g03560Os.32569.2.S1_x_at11/113+1532402..1537496FHA domain containing protein, expressed
LOC_Os03g03570Os.32644.1.S1_at7/113+1540546..1543309leucine-rich repeat transmembrane protein kinase, putative, expressed
LOC_Os03g03580Os.32644.1.S2_at5/113+1543806..1544896hypothetical protein
LOC_Os03g03590Os.17941.2.S1_x_at11/113+1546327..1550330K+ efflux antiporter, putative, expressed
LOC_Os03g03590Os.17941.1.S1_s_at11/113+1546327..1550330K+ efflux antiporter, putative, expressed
LOC_Os03g03600Os.5826.2.S1_a_at11/113+1557698..1559253Fasciclin-like arabinogalactan protein 8 precursor, putative, expressed
LOC_Os03g03610Os.14984.1.S1_a_at11/113+1560521..15741791,3-beta-glucan synthase component family protein, expressed
LOC_Os03g03610Os.54124.1.S1_at1/113+1560521..15741791,3-beta-glucan synthase component family protein, expressed
LOC_Os03g03620OsAffx.13603.1.S1_at11/113+1577054..1580404glycosyl transferase family 48 protein, putative, expressed
LOC_Os03g03630Os.4320.1.S1_at11/113+1586374..1587346expressed protein
LOC_Os03g03640Os.4321.1.S1_at11/113+1588134..1590083expressed protein
LOC_Os03g03650Os.4685.1.S1_at11/113+1590668..1594786DNA polymerase delta small subunit, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006075biological_processbeta-1,3 glucan biosynthesis
GO:0009556biological_processmicrosporogenesis
GO:0009620biological_processresponse to fungi
GO:0009860biological_processpollen tube growth
GO:0009863biological_processsalicylic acid mediated signaling pathway
GO:0009870biological_processdefense response signaling pathway, resistance gene-dependent
GO:0009965biological_processleaf morphogenesis
GO:0010208biological_processpollen wall formation
GO:0000148cellular_component1,3-beta-glucan synthase complex
GO:0009504cellular_componentcell plate
GO:0003843molecular_function1,3-beta-glucan synthase activity
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.14984.1.S1_a_at--386--791Chr03:1561076..1561100 (25 bp)
ATGGGAGTTCTTCTCTTTACACCAA
LOC_Os03g03610
Os.14984.1.S1_a_at--808--6731Chr03:1561070..1561094 (25 bp)
GTTCTTCTCTTTACACCAATTACTA
LOC_Os03g03610
Os.14984.1.S1_a_at--384--1191Chr03:1561049..1561073 (25 bp)
ACTATTTTGGCATGGTTTCCCTTTG
LOC_Os03g03610
Os.14984.1.S1_a_at--813--10291Chr03:1561034..1561058 (25 bp)
TTTCCCTTTGTGTCCGAGTTTCAGA
LOC_Os03g03610
Os.14984.1.S1_a_at--455--4071Chr03:1561020..1561044 (25 bp)
CGAGTTTCAGACACGGATGCTATTT
LOC_Os03g03610
Os.14984.1.S1_a_at--262--5631Chr03:1561011..1561035 (25 bp)
GACACGGATGCTATTTAATCAAGCG
LOC_Os03g03610
Os.14984.1.S1_a_at--1011--10491Chr03:1560997..1561021 (25 bp)
TTAATCAAGCGTTCAGTAGAGGACT
LOC_Os03g03610
Os.14984.1.S1_a_at--923--6171Chr03:1560979..1561003 (25 bp)
GAGGACTGCAAATCTCTCGGATTCT
LOC_Os03g03610
Os.14984.1.S1_a_at--950--9491Chr03:1560967..1560991 (25 bp)
TCTCTCGGATTCTTGGTGGTCAGAA
LOC_Os03g03610
Os.14984.1.S1_a_at--388--5891Chr03:1560938..1560962 (25 bp)
GAGCGGGAGCGGTCCTCTCGCAACA
LOC_Os03g03610
Os.14984.1.S1_a_at--785--4671Chr03:1560930..1560954 (25 bp)
GCGGTCCTCTCGCAACAAGGACTGA
LOC_Os03g03610
Target Sequence 
ATGGGAGTTCTTCTCTTTACACCAATTACTATTTTGGCATGGTTTCCCTTTGTGTCCGAGTTTCAGACACGGATGCTATT
TAATCAAGCGTTCAGTAGAGGACTGCAAATCTCTCGGATTCTTGGTGGTCAGAAGAAGGAGCGGGAGCGGTCCTCTCGCA
ACAAGGACTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.14984.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis