Browse Element(s) Details


Os.32569.1.S1_at

Description gb:AK103695.1
DB_XREF= gi:32988904
TID=Os.32569.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.32569 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) Hypothetical protein (OJ1015F07.13), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033136J18, full insert sequence.
FL= gb:AK103695.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0356011/11FHA domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g03540OsAffx.22284.1.S1_at11/113+1507610..1509967no apical meristem, putative, expressed
LOC_Os03g03540OsAffx.22284.1.S1_x_at11/113+1507610..1509967no apical meristem, putative, expressed
LOC_Os03g03550Os.18178.1.S1_at7/113+1529769..1532164bZIP family transcription factor, putative, expressed
LOC_Os03g03560Os.32569.1.S1_at11/113+1532402..1537496FHA domain containing protein, expressed
LOC_Os03g03560Os.32569.2.S1_x_at11/113+1532402..1537496FHA domain containing protein, expressed
LOC_Os03g03570Os.32644.1.S1_at7/113+1540546..1543309leucine-rich repeat transmembrane protein kinase, putative, expressed
LOC_Os03g03580Os.32644.1.S2_at5/113+1543806..1544896hypothetical protein
LOC_Os03g03590Os.17941.2.S1_x_at11/113+1546327..1550330K+ efflux antiporter, putative, expressed
LOC_Os03g03590Os.17941.1.S1_s_at11/113+1546327..1550330K+ efflux antiporter, putative, expressed
LOC_Os03g03600Os.5826.2.S1_a_at11/113+1557698..1559253Fasciclin-like arabinogalactan protein 8 precursor, putative, expressed
LOC_Os03g03610Os.14984.1.S1_a_at11/113+1560521..15741791,3-beta-glucan synthase component family protein, expressed
LOC_Os03g03610Os.54124.1.S1_at1/113+1560521..15741791,3-beta-glucan synthase component family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0042306biological_processregulation of protein import into nucleus
GO:0005856cellular_componentcytoskeleton
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.32569.1.S1_at--669--351Chr03:1532647..1532671 (25 bp)
ATAAGGCAGCTACTTTTCCTCGTAA
LOC_Os03g03560
Os.32569.1.S1_at--188--4851Chr03:1532639..1532663 (25 bp)
GCTACTTTTCCTCGTAAATATCTTA
LOC_Os03g03560
Os.32569.1.S1_at--563--251Chr03:1532622..1532646 (25 bp)
ATATCTTAACCATTTTACCCTGCAC
LOC_Os03g03560
Os.32569.1.S1_at--894--4271Chr03:1532604..1532628 (25 bp)
CCTGCACTCGGGTATGAGCTTGTAC
LOC_Os03g03560
Os.32569.1.S1_at--643--3111Chr03:1532540..1532564 (25 bp)
AATTTCTCTTTATCATTTTCGTATG
LOC_Os03g03560
Os.32569.1.S1_at--313--431Chr03:1532529..1532553 (25 bp)
ATCATTTTCGTATGACCTGGCATAA
LOC_Os03g03560
Os.32569.1.S1_at--306--5831Chr03:1532516..1532540 (25 bp)
GACCTGGCATAACTAGTTTTTATTG
LOC_Os03g03560
Os.32569.1.S1_at--1068--8211Chr03:1532476..1532500 (25 bp)
GGCAATTTTATGTAATGTTCCCCAC
LOC_Os03g03560
Os.32569.1.S1_at--370--9751Chr03:1532464..1532488 (25 bp)
TAATGTTCCCCACATTCCTTTTTGT
LOC_Os03g03560
Os.32569.1.S1_at--614--9711Chr03:1532432..1532456 (25 bp)
TACAAGTGTATCTTAACGAACCGGG
LOC_Os03g03560
Os.32569.1.S1_at--617--7691Chr03:1532409..1532433 (25 bp)
GGGTACTCAAAATACTCGACATAGA
LOC_Os03g03560
Target Sequence 
ATAAGGCAGCTACTTTTCCTCGTAAATATCTTAACCATTTTACCCTGCACTCGGGTATGAGCTTGTACCATTTTTTTCAA
TGTGCATTTTTTTTTCATTTCATTTCAAATTTCTCTTTATCATTTTCGTATGACCTGGCATAACTAGTTTTTATTGTGAA
TGGTTGGCAATGGCAATTTTATGTAATGTTCCCCACATTCCTTTTTGTCGATAAATACAAGTGTATCTTAACGAACCGGG
GTACTCAAAATACTCGACATAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.32569.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis