Browse Element(s) Details


OsAffx.22284.1.S1_at

Description tigr:9631.m00265
TID=OsAffx.22284.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=No apical meristem (NAM) protein, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0354011/11no apical meristem, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g03480OsAffx.3123.1.S1_at11/113+1483685..1484395uncharacterized plant-specific domain TIGR01568 family protein, expressed
LOC_Os03g03490Os.27131.1.S1_at11/113+1486445..1488013expressed protein
LOC_Os03g03500Os.33603.1.S1_at11/113+1489666..1490917heavy metal-associated domain containing protein, expressed
LOC_Os03g03510OsAffx.12721.1.S1_at11/113+1492992..1497363CIPK-like protein 1, putative, expressed
LOC_Os03g03520OsAffx.12722.1.S1_at10/113+1499506..1501322hypothetical protein
LOC_Os03g03520Os.56075.1.S1_at9/113+1499506..1501322hypothetical protein
LOC_Os03g03530Os.35218.2.S1_x_at10/113+1503735..1505379hypothetical protein
LOC_Os03g03530Os.35218.1.S1_at7/113+1503735..1505379hypothetical protein
LOC_Os03g03540OsAffx.22284.1.S1_at11/113+1507610..1509967no apical meristem, putative, expressed
LOC_Os03g03540OsAffx.22284.1.S1_x_at11/113+1507610..1509967no apical meristem, putative, expressed
LOC_Os03g03550Os.18178.1.S1_at7/113+1529769..1532164bZIP family transcription factor, putative, expressed
LOC_Os03g03560Os.32569.1.S1_at11/113+1532402..1537496FHA domain containing protein, expressed
LOC_Os03g03560Os.32569.2.S1_x_at11/113+1532402..1537496FHA domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0045449biological_processregulation of transcription
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.22284.1.S1_at--256--5711Chr03:1508185..1508209 (25 bp)
GACTACTCCTTGCACGAGCGCAACA
LOC_Os03g03540
OsAffx.22284.1.S1_at--199--3631Chr03:1508177..1508201 (25 bp)
CTTGCACGAGCGCAACATCATGAGC
LOC_Os03g03540
OsAffx.22284.1.S1_at--788--3931Chr03:1508118..1508142 (25 bp)
CGGCGTACGCGCAGATGAGGCGGCA
LOC_Os03g03540
OsAffx.22284.1.S1_at--203--691Chr03:1508104..1508128 (25 bp)
ATGAGGCGGCAGCACAGGAGCGGGC
LOC_Os03g03540
OsAffx.22284.1.S1_at--783--8071Chr03:1508088..1508112 (25 bp)
GGAGCGGGCGGTTCAAGCAGGAGGC
LOC_Os03g03540
OsAffx.22284.1.S1_at--37--5731Chr03:1507924..1507948 (25 bp)
GACTGCAAGGGCGATAATGGCGGTA
LOC_Os03g03540
OsAffx.22284.1.S1_at--491--1871Chr03:1507858..1507882 (25 bp)
ACGACCACGGACTGGAGAGCGCTCG
LOC_Os03g03540
OsAffx.22284.1.S1_at--530--3451Chr03:1507758..1507782 (25 bp)
CAGTCGCCGGTGTGAGCTCGCCGCT
LOC_Os03g03540
OsAffx.22284.1.S1_at--637--5852Chr03:1507732..1507756 (25 bp)
GACCACGGCGATGACGACATGGCAG
LOC_Os03g03540
OsAffx.22284.1.S1_at--235--8511Chr03:1507713..1507737 (25 bp)
TGGCAGCATTGCTGTTTCTCAACAG
LOC_Os03g03540
OsAffx.22284.1.S1_at--626--3871Chr03:1507702..1507726 (25 bp)
CTGTTTCTCAACAGCGACGAGAGAG
LOC_Os03g03540
Target Sequence 
GACTACTCCTTGCACGAGCGCAACATCATGAGCGCCGCGGCGGCGGCGGCGTTCGCCGATCCGAGCGCGGCGTACGCGCA
GATGAGGCGGCAGCACAGGAGCGGGCGGTTCAAGCAGGAGGCGGAGCTGGACGGCGCCGCCACAGCCCTCCTCCACTACT
CCAGCCACCTCGCCGAGCTGCCGCAGCTCGAGAGCCCCTCCGCGGCTGCGGCGCCGCTCCAGCCCAACCCGAGCCAGCTG
GCCACCGCCGGCGAGGACGACGACTGCAAGGGCGATAATGGCGGTAGGAGGGCCAAGAAAGCCCGCGCCGCCGGCGACAA
GGTGGCGACGACCACGGACTGGAGAGCGCTCGACAAGTTCGTCGCGTCGCAGCTTAGCCCCGGGGAGTGTGGCAGCATGG
AGGCAACGGCGGAAGCCGCGGCGGCGGCAGTCGCCGGTGTGAGCTCGCCGCTGGACCACGGCGATGACGACATGGCAGCA
TTGCTGTTTCTCAACAGCGACGAGAGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.22284.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis