Browse Element(s) Details


Os.35218.2.S1_x_at

Description gb:NM_187583.1
DB_XREF= gi:34902251
GEN=OJ1015F07.10
TID=Os.35218.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.35218 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) Unknown protein (OJ1015F07.10), mRNA.
PROD=Unknown protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0353010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g03470Os.9765.1.S1_a_at11/113+1478009..1482577expressed protein
LOC_Os03g03470Os.9765.2.S1_at10/113+1478009..1482577expressed protein
LOC_Os03g03480OsAffx.3123.1.S1_at11/113+1483685..1484395uncharacterized plant-specific domain TIGR01568 family protein, expressed
LOC_Os03g03490Os.27131.1.S1_at11/113+1486445..1488013expressed protein
LOC_Os03g03500Os.33603.1.S1_at11/113+1489666..1490917heavy metal-associated domain containing protein, expressed
LOC_Os03g03510OsAffx.12721.1.S1_at11/113+1492992..1497363CIPK-like protein 1, putative, expressed
LOC_Os03g03520OsAffx.12722.1.S1_at10/113+1499506..1501322hypothetical protein
LOC_Os03g03520Os.56075.1.S1_at9/113+1499506..1501322hypothetical protein
LOC_Os03g03530Os.35218.2.S1_x_at10/113+1503735..1505379hypothetical protein
LOC_Os03g03530Os.35218.1.S1_at7/113+1503735..1505379hypothetical protein
LOC_Os03g03540OsAffx.22284.1.S1_at11/113+1507610..1509967no apical meristem, putative, expressed
LOC_Os03g03540OsAffx.22284.1.S1_x_at11/113+1507610..1509967no apical meristem, putative, expressed
LOC_Os03g03550Os.18178.1.S1_at7/113+1529769..1532164bZIP family transcription factor, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.35218.2.S1_x_at--178--4471Chr03:1504797..1505296 (25 bp)
GCCTCCGCTTCTGAAATACAGCATG
LOC_Os03g03530
Os.35218.2.S1_x_at--537--9871Chr03:1504781..1504805 (25 bp)
TACAGCATGGTGATACTTTTCAATG
LOC_Os03g03530
Os.35218.2.S1_x_at--1125--7351Chr03:1504736..1504760 (25 bp)
GTGAACAGCCTCAAAGCACTGTCAT
LOC_Os03g03530
Os.35218.2.S1_x_at--356--2731Chr03:1504705..1504729 (25 bp)
AAGCAACCGTCACCAATTTTGCTGC
LOC_Os03g03530
Os.35218.2.S1_x_at--776--10391Chr03:1504689..1504713 (25 bp)
TTTTGCTGCCAACTTCATTTCATCA
LOC_Os03g03530
Os.35218.2.S1_x_at--484--10271Chr03:1504672..1504696 (25 bp)
TTTCATCAGGTCTTGCAGGGTACTT
LOC_Os03g03530
Os.35218.2.S1_x_at--462--1051Chr03:1504656..1504680 (25 bp)
AGGGTACTTTCTGTTCGAGGAGCCA
LOC_Os03g03530
Os.35218.2.S1_x_at--164--8811Chr03:1504645..1504669 (25 bp)
TGTTCGAGGAGCCACTGCCTTCTAA
LOC_Os03g03530
Os.35218.2.S1_x_at--98--1991NONE
ACTGCCTTCTAAGTGGTTTGTAGGT
NONE
Os.35218.2.S1_x_at--694--6931Chr03:1503788..1503812 (25 bp)
GTAGGTGCTAGTCTTATCATTGTTG
LOC_Os03g03530
Os.35218.2.S1_x_at--823--10851Chr03:1503766..1503790 (25 bp)
TTGGTGTTTTTATCCTAAGCAAATC
LOC_Os03g03530
Target Sequence 
GCCTCCGCTTCTGAAATACAGCATGGTGATACTTTTCAATGTGACAATGTGGGGCTGCTATGTGAACAGCCTCAAAGCAC
TGTCATCCCTCCAAGCAACCGTCACCAATTTTGCTGCCAACTTCATTTCATCAGGTCTTGCAGGGTACTTTCTGTTCGAG
GAGCCACTGCCTTCTAAGTGGTTTGTAGGTGCTAGTCTTATCATTGTTGGTGTTTTTATCCTAAGCAAATC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.35218.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis