Browse Element(s) Details


OsAffx.12721.1.S1_at

Description tigr:9631.m00262
TID=OsAffx.12721.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Protein kinase domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0351011/11CIPK-like protein 1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g03450Os.26406.1.S1_at11/113+1463965..1469004Anthranilate phosphoribosyltransferase, chloroplast precursor, putative, expressed
LOC_Os03g03450Os.26406.2.S1_x_at10/113+1463965..1469004Anthranilate phosphoribosyltransferase, chloroplast precursor, putative, expressed
LOC_Os03g03460OsAffx.12720.1.S1_x_at11/113+1472653..1475590C-terminal binding protein, putative, expressed
LOC_Os03g03460OsAffx.12720.1.S1_at10/113+1472653..1475590C-terminal binding protein, putative, expressed
LOC_Os03g03460Os.40094.1.A1_at10/113+1472653..1475590C-terminal binding protein, putative, expressed
LOC_Os03g03470Os.9765.1.S1_a_at11/113+1478009..1482577expressed protein
LOC_Os03g03470Os.9765.2.S1_at10/113+1478009..1482577expressed protein
LOC_Os03g03480OsAffx.3123.1.S1_at11/113+1483685..1484395uncharacterized plant-specific domain TIGR01568 family protein, expressed
LOC_Os03g03490Os.27131.1.S1_at11/113+1486445..1488013expressed protein
LOC_Os03g03500Os.33603.1.S1_at11/113+1489666..1490917heavy metal-associated domain containing protein, expressed
LOC_Os03g03510OsAffx.12721.1.S1_at11/113+1492992..1497363CIPK-like protein 1, putative, expressed
LOC_Os03g03520OsAffx.12722.1.S1_at10/113+1499506..1501322hypothetical protein
LOC_Os03g03520Os.56075.1.S1_at9/113+1499506..1501322hypothetical protein
LOC_Os03g03530Os.35218.2.S1_x_at10/113+1503735..1505379hypothetical protein
LOC_Os03g03530Os.35218.1.S1_at7/113+1503735..1505379hypothetical protein
LOC_Os03g03540OsAffx.22284.1.S1_at11/113+1507610..1509967no apical meristem, putative, expressed
LOC_Os03g03540OsAffx.22284.1.S1_x_at11/113+1507610..1509967no apical meristem, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12721.1.S1_at--251--1311Chr03:1493512..1493536 (25 bp)
AGAGGTGATCTTTAGTATTCCAACT
LOC_Os03g03510
OsAffx.12721.1.S1_at--91--1211Chr03:1493499..1493523 (25 bp)
AGTATTCCAACTATCCAATGCTCCT
LOC_Os03g03510
OsAffx.12721.1.S1_at--571--2531Chr03:1493491..1493515 (25 bp)
AACTATCCAATGCTCCTGGATGTAG
LOC_Os03g03510
OsAffx.12721.1.S1_at--350--3691Chr03:1493460..1493484 (25 bp)
CTTTGTAGCGTTTGCACCATTTCTC
LOC_Os03g03510
OsAffx.12721.1.S1_at--1067--5071Chr03:1493447..1493471 (25 bp)
GCACCATTTCTCCAGGTGATACCAA
LOC_Os03g03510
OsAffx.12721.1.S1_at--742--2311Chr03:1493424..1493448 (25 bp)
AAAGGATATCGTCCTCCTGGTCTTG
LOC_Os03g03510
OsAffx.12721.1.S1_at--295--3811Chr03:1493411..1493435 (25 bp)
CTCCTGGTCTTGTGCACATTGATGA
LOC_Os03g03510
OsAffx.12721.1.S1_at--701--431Chr03:1493369..1493393 (25 bp)
ATCTTGTTGTGCCAATCCTTGCAAA
LOC_Os03g03510
OsAffx.12721.1.S1_at--1125--2371Chr03:1493054..1493078 (25 bp)
AAACTGTAATGGCTTCACACCTGAG
LOC_Os03g03510
OsAffx.12721.1.S1_at--905--851Chr03:1493046..1493070 (25 bp)
ATGGCTTCACACCTGAGCTATGGGT
LOC_Os03g03510
OsAffx.12721.1.S1_at--819--5911Chr03:1493032..1493056 (25 bp)
GAGCTATGGGTGTATGTATTCAATC
LOC_Os03g03510
Target Sequence 
AGAGGTGATCTTTAGTATTCCAACTATCCAATGCTCCTGGATGTAGTTCCCCCTTTGTAGCGTTTGCACCATTTCTCCAG
GTGATACCAAAGGATATCGTCCTCCTGGTCTTGTGCACATTGATGAATTTTCTGTGGGGTCACATCTTGTTGTGCCAATC
CTTGCAAAAGGGAGCGCTTTTTTTTTTCTTTTTACCCTTAGCGCAACTGTAGACATGCTCACATGCATGTATAAGGCCCT
CCCGGAGATGCACCTTGTATTTGCAGTTGGGATGTCAAATAGGTGTCCTACATGCTTTGGTGACCAGTAGGGTTGTGTGC
CTTTTCTTTTAGTGCTGAAAAGTATATAATAAGATCAAAATGTGAAATTGGGAGGCTATGTAACACTAAGCTGTGCTCTG
TTCTTGAGAAACCTAGCAGCAGAATGGCAGTGTAACTTTGTTAGTTCTTTCTTTTGTGAAACTGTAATGGCTTCACACCT
GAGCTATGGGTGTATGTATTCAATC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12721.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis