Browse Element(s) Details


Os.26406.2.S1_x_at

Description gb:AY224452.1
DB_XREF= gi:29367396
TID=Os.26406.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.26406 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) isolate 23268 putative phosphoribosylanthranilate transferase mRNA, partial cds
DEF=Oryza sativa (japonica cultivar-group) isolate 23268 putative phosphoribosylanthranilate transferase mRNA, partial cds.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0345010/11Anthranilate phosphoribosyltransferase, chloroplast precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g03410Os.17794.1.S1_at11/113+1435869..1439722Protein kinase domain containing protein, expressed
LOC_Os03g03420Os.5703.1.S1_at10/113+1441866..1445268expressed protein
LOC_Os03g03420OsAffx.3122.1.S1_at5/113+1441866..1445268expressed protein
LOC_Os03g03420OsAffx.661.1.S1_x_at1/113+1441866..1445268expressed protein
LOC_Os03g03430Os.27444.1.S1_at11/113+1454680..1461695CBS domain-containing protein, putative, expressed
LOC_Os03g03430Os.49363.2.S1_at1/113+1454680..1461695CBS domain-containing protein, putative, expressed
LOC_Os03g03430OsAffx.941.1.S1_x_at1/113+1454680..1461695CBS domain-containing protein, putative, expressed
LOC_Os03g03440Os.14926.1.S1_at11/113+1462557..1464442expressed protein
LOC_Os03g03440Os.14926.2.S1_x_at10/113+1462557..1464442expressed protein
LOC_Os03g03450Os.26406.1.S1_at11/113+1463965..1469004Anthranilate phosphoribosyltransferase, chloroplast precursor, putative, expressed
LOC_Os03g03450Os.26406.2.S1_x_at10/113+1463965..1469004Anthranilate phosphoribosyltransferase, chloroplast precursor, putative, expressed
LOC_Os03g03460OsAffx.12720.1.S1_x_at11/113+1472653..1475590C-terminal binding protein, putative, expressed
LOC_Os03g03460OsAffx.12720.1.S1_at10/113+1472653..1475590C-terminal binding protein, putative, expressed
LOC_Os03g03460Os.40094.1.A1_at10/113+1472653..1475590C-terminal binding protein, putative, expressed
LOC_Os03g03470Os.9765.1.S1_a_at11/113+1478009..1482577expressed protein
LOC_Os03g03470Os.9765.2.S1_at10/113+1478009..1482577expressed protein
LOC_Os03g03480OsAffx.3123.1.S1_at11/113+1483685..1484395uncharacterized plant-specific domain TIGR01568 family protein, expressed
LOC_Os03g03490Os.27131.1.S1_at11/113+1486445..1488013expressed protein
LOC_Os03g03500Os.33603.1.S1_at11/113+1489666..1490917heavy metal-associated domain containing protein, expressed
LOC_Os03g03510OsAffx.12721.1.S1_at11/113+1492992..1497363CIPK-like protein 1, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0000162biological_processtryptophan biosynthesis
GO:0009507cellular_componentchloroplast
GO:0004048molecular_functionanthranilate phosphoribosyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.26406.2.S1_x_at--928--1191Chr03:1466483..1466507 (25 bp)
AGTTTTCAATATCCTTGGTCCTCTC
LOC_Os03g03450
Os.26406.2.S1_x_at--99--8611Chr03:1466468..1466492 (25 bp)
TGGTCCTCTCTTAAATCCAGCAAGG
LOC_Os03g03450
Os.26406.2.S1_x_at--49--5191Chr03:1466449..1466473 (25 bp)
GCAAGGGTGCCTTATGCTGTTATTG
LOC_Os03g03450
Os.26406.2.S1_x_at--63--7951Chr03:1465697..1465721 (25 bp)
GGATATATCCTTGATGTCACACCAA
LOC_Os03g03450
Os.26406.2.S1_x_at--840--11NONE
ATTGGATTTTGGTATACCCCGCTGC
NONE
Os.26406.2.S1_x_at--1117--4191Chr03:1465400..1465424 (25 bp)
CCCGCTGCACGCTGGAAGATCTAAA
LOC_Os03g03450
Os.26406.2.S1_x_at--289--991Chr03:1465375..1465399 (25 bp)
AGGAGGTGATCCAGCGTTCAACGCA
LOC_Os03g03450
Os.26406.2.S1_x_at--137--2331Chr03:1465350..1465374 (25 bp)
AAAGTTCTCCAGGATGTTCTTGCTG
LOC_Os03g03450
Os.26406.2.S1_x_at--1075--6331Chr03:1464978..1465329 (25 bp)
GATGCTCTCGTGCTGAATGCTGCAG
LOC_Os03g03450
Os.26406.2.S1_x_at--262--3411Chr03:1464956..1464980 (25 bp)
CAGCATCTCTTCTTGTCAGTGGTAA
LOC_Os03g03450
Os.26406.2.S1_x_at--725--7651Chr03:1464878..1464902 (25 bp)
GGGAGGCCATCAACACACTTGAATC
LOC_Os03g03450
Target Sequence 
AGTTTTCAATATCCTTGGTCCTCTCTTAAATCCAGCAAGGGTGCCTTATGCTGTTATTGGTGTTTACCACGAGAACATAG
TTACCAAGATGGCTAAGGCAGCTCAGAAATTTGGAATGAAGAGAGCATTGGTTGTCCATTCGAAGGGTTTGGATGAAATA
AGCCCACTTGGGCCTGGATATATCCTTGATGTCACACCAAGAAAGATTGAAAAAATGCTCTTCGATCCATTGGATTTTGG
TATACCCCGCTGCACGCTGGAAGATCTAAAAGGAGGTGATCCAGCGTTCAACGCAAAAGTTCTCCAGGATGTTCTTGCTG
GTCAAAGAGGTTCAATTGCTGATGCTCTCGTGCTGAATGCTGCAGCATCTCTTCTTGTCAGTGGTAAAGTAAATACTTTG
CATGATGGTGTAGCGTTAGCACAGGAAACACAACGCTCCGGGGAGGCCATCAACACACTTGAATC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.26406.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis