Browse Element(s) Details


OsAffx.12720.1.S1_x_at

Description tigr:9631.m00256
TID=OsAffx.12720.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0346011/11C-terminal binding protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g03430Os.27444.1.S1_at11/113+1454680..1461695CBS domain-containing protein, putative, expressed
LOC_Os03g03430Os.49363.2.S1_at1/113+1454680..1461695CBS domain-containing protein, putative, expressed
LOC_Os03g03430OsAffx.941.1.S1_x_at1/113+1454680..1461695CBS domain-containing protein, putative, expressed
LOC_Os03g03440Os.14926.1.S1_at11/113+1462557..1464442expressed protein
LOC_Os03g03440Os.14926.2.S1_x_at10/113+1462557..1464442expressed protein
LOC_Os03g03450Os.26406.1.S1_at11/113+1463965..1469004Anthranilate phosphoribosyltransferase, chloroplast precursor, putative, expressed
LOC_Os03g03450Os.26406.2.S1_x_at10/113+1463965..1469004Anthranilate phosphoribosyltransferase, chloroplast precursor, putative, expressed
LOC_Os03g03460OsAffx.12720.1.S1_x_at11/113+1472653..1475590C-terminal binding protein, putative, expressed
LOC_Os03g03460OsAffx.12720.1.S1_at10/113+1472653..1475590C-terminal binding protein, putative, expressed
LOC_Os03g03460Os.40094.1.A1_at10/113+1472653..1475590C-terminal binding protein, putative, expressed
LOC_Os03g03470Os.9765.1.S1_a_at11/113+1478009..1482577expressed protein
LOC_Os03g03470Os.9765.2.S1_at10/113+1478009..1482577expressed protein
LOC_Os03g03480OsAffx.3123.1.S1_at11/113+1483685..1484395uncharacterized plant-specific domain TIGR01568 family protein, expressed
LOC_Os03g03490Os.27131.1.S1_at11/113+1486445..1488013expressed protein
LOC_Os03g03500Os.33603.1.S1_at11/113+1489666..1490917heavy metal-associated domain containing protein, expressed
LOC_Os03g03510OsAffx.12721.1.S1_at11/113+1492992..1497363CIPK-like protein 1, putative, expressed
LOC_Os03g03520OsAffx.12722.1.S1_at10/113+1499506..1501322hypothetical protein
LOC_Os03g03520Os.56075.1.S1_at9/113+1499506..1501322hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0000226biological_processmicrotubule cytoskeleton organization and biogenesis
GO:0009965biological_processleaf morphogenesis
GO:0042814biological_processmonopolar cell growth
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12720.1.S1_x_at--547--8851Chr03:1474243..1474267 (25 bp)
TGAGTTCCAGTTCACGATTTGCGTC
LOC_Os03g03460
OsAffx.12720.1.S1_x_at--829--6511Chr03:1474228..1474252 (25 bp)
GATTTGCGTCTCCTGAGGACTCAAA
LOC_Os03g03460
OsAffx.12720.1.S1_x_at--1072--5771Chr03:1474155..1474179 (25 bp)
GACGAAGTTGCCTACAGTTCTCAGA
LOC_Os03g03460
OsAffx.12720.1.S1_x_at--334--3151Chr03:1474073..1474097 (25 bp)
AATTCAGGGTTCCATGTTGCAAGAC
LOC_Os03g03460
OsAffx.12720.1.S1_x_at--483--4811Chr03:1473980..1474004 (25 bp)
GCTCAGTTCCTAGTCACTTTCAAAA
LOC_Os03g03460
OsAffx.12720.1.S1_x_at--760--251Chr03:1473833..1473857 (25 bp)
ATACCATGGGATTACGTTCCTTCGT
LOC_Os03g03460
OsAffx.12720.1.S1_x_at--343--9251Chr03:1473816..1473840 (25 bp)
TCCTTCGTCGCTGGTGGTAAACTAT
LOC_Os03g03460
OsAffx.12720.1.S1_x_at--981--7871Chr03:1473486..1473510 (25 bp)
GGTTTTATACCTCTACTTGTACAAG
LOC_Os03g03460
OsAffx.12720.1.S1_x_at--561--9831Chr03:1473453..1473477 (25 bp)
TACAAGCAGATACACCCAACCAAAA
LOC_Os03g03460
OsAffx.12720.1.S1_x_at--108--3151Chr03:1472923..1473181 (25 bp)
AATTCATCGGCTGTATTGGACGTCT
LOC_Os03g03460
OsAffx.12720.1.S1_x_at--433--8531Chr03:1472907..1472931 (25 bp)
TGGACGTCTGTATCGAGATCCTTGC
LOC_Os03g03460
Target Sequence 
TGAGTTCCAGTTCACGATTTGCGTCTCCTGAGGACTCAAAATACAAGCAGAAATCTCCTGCTGAATCCCCAATGGAAATA
ACTTCTGAGACGAAGTTGCCTACAGTTCTCAGAAGGAAATATCCTGATACACTCAAAGATGGTTTTGTTGTAGCCTTGAG
AACAAAAGATAATTCAGGGTTCCATGTTGCAAGACAGAGACTTGCTGGTGGTGGTGGTTGGATCCTTGATATCGTGTCAA
ATGCTACAAACAGGGACCCTGCTGCTCAGTTCCTAGTCACTTTCAAAAACAAGGATACCATGGGATTACGTTCCTTCGTC
GCTGGTGGTAAACTATTGCAGGTTTTATACCTCTACTTGTACAAGTTGCACTGTACAAGCAGATACACCCAACCAAAAAT
TAATAGGAGGATGGAGTTTGTGTTTGCAAGTCATACATTTGATGTTTGGGAGAGCTGGATGCTGGAGGGGTCCTTGTTGG
AGGGTTGCAAACTTATCAATTGCAGAAATTCATCGGCTGTATTGGACGTCTGTATCGAGATCCTTGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12720.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis