Browse Element(s) Details


OsAffx.941.1.S1_x_at

Description gb:NM_191565.1
DB_XREF= gi:34910213
GEN=B1060H01.21
TID=OsAffx.941.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) B1060H01.21 (B1060H01.21), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g034301/11CBS domain-containing protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g03400Os.26776.1.S1_at11/113+1427416..1430365expressed protein
LOC_Os03g03400OsAffx.12719.1.S1_x_at11/113+1427416..1430365expressed protein
LOC_Os03g03400OsAffx.12719.1.S1_at11/113+1427416..1430365expressed protein
LOC_Os03g03410Os.17794.1.S1_at11/113+1435869..1439722Protein kinase domain containing protein, expressed
LOC_Os03g03420Os.5703.1.S1_at10/113+1441866..1445268expressed protein
LOC_Os03g03420OsAffx.3122.1.S1_at5/113+1441866..1445268expressed protein
LOC_Os03g03420OsAffx.661.1.S1_x_at1/113+1441866..1445268expressed protein
LOC_Os03g03430Os.27444.1.S1_at11/113+1454680..1461695CBS domain-containing protein, putative, expressed
LOC_Os03g03430Os.49363.2.S1_at1/113+1454680..1461695CBS domain-containing protein, putative, expressed
LOC_Os03g03430OsAffx.941.1.S1_x_at1/113+1454680..1461695CBS domain-containing protein, putative, expressed
LOC_Os03g03440Os.14926.1.S1_at11/113+1462557..1464442expressed protein
LOC_Os03g03440Os.14926.2.S1_x_at10/113+1462557..1464442expressed protein
LOC_Os03g03450Os.26406.1.S1_at11/113+1463965..1469004Anthranilate phosphoribosyltransferase, chloroplast precursor, putative, expressed
LOC_Os03g03450Os.26406.2.S1_x_at10/113+1463965..1469004Anthranilate phosphoribosyltransferase, chloroplast precursor, putative, expressed
LOC_Os03g03460OsAffx.12720.1.S1_x_at11/113+1472653..1475590C-terminal binding protein, putative, expressed
LOC_Os03g03460OsAffx.12720.1.S1_at10/113+1472653..1475590C-terminal binding protein, putative, expressed
LOC_Os03g03460Os.40094.1.A1_at10/113+1472653..1475590C-terminal binding protein, putative, expressed
LOC_Os03g03470Os.9765.1.S1_a_at11/113+1478009..1482577expressed protein
LOC_Os03g03470Os.9765.2.S1_at10/113+1478009..1482577expressed protein
LOC_Os03g03480OsAffx.3123.1.S1_at11/113+1483685..1484395uncharacterized plant-specific domain TIGR01568 family protein, expressed
LOC_Os03g03490Os.27131.1.S1_at11/113+1486445..1488013expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.941.1.S1_x_at--287--5811Chr01:31012469..31012980 (25 bp)
GACCCACTACCTCCATGACAGAGAG
NONE
OsAffx.941.1.S1_x_at--312--2032Chr02:28870158..28870505 (25 bp)
ACTACCTCCATGACAGAGAGAGAGA
NONE
OsAffx.941.1.S1_x_at--570--3432Chr01:31012822..31012846 (25 bp)
CAGAGGCGAGGTCCGGCCGACGTCA
NONE
OsAffx.941.1.S1_x_at--158--1753Chr02:28870312..28870336 (25 bp)
ACCTCCCCACCATGAACAGAGAGAG
NONE
OsAffx.941.1.S1_x_at--158--9314Chr02:28870309..28870333 (25 bp)
TCCCCACCATGAACAGAGAGAGAGA
NONE
OsAffx.941.1.S1_x_at--537--13518Chr12:18998253..18998353 (25 bp)
AGAGAGAGAAAGAGACCCCGCCGCC
NONE
OsAffx.941.1.S1_x_at--538--1355Chr08:27805249..27805526 (25 bp)
AGAGAGAAAGAGACCCCGCCGCCGC
NONE
OsAffx.941.1.S1_x_at--203--6011Chr01:31012679..31012703 (25 bp)
GAGGAGGCGAGGTCCGGCCGACGTC
NONE
OsAffx.941.1.S1_x_at--939--4171Chr01:31012631..31012655 (25 bp)
CCCACCATGAACACACACAGAGAGA
NONE
OsAffx.941.1.S1_x_at--485--6012Chr02:28870140..28870163 (24 bp)
GAGAGACGACGACGTCGCCTCTCCT
NONE
OsAffx.941.1.S1_x_at--121--3391Chr01:31012567..31012591 (25 bp)
CAGCCGTGCCTCTATGCCGCCGGAT
NONE
Target Sequence 
GACCCACTACCTCCATGACAGAGAGAGAGAGAGACGACGCCGCCGCCTCTCCCGCCCCGCCGGACCGCAGCCGCCTCCAT
GCCGCCGGATCTGGCAGAGGCGAGGTCCGGCCGACGTCAGCCGCCACCGCCGCCGCACCTCCCCACCATGAACAGAGAGA
GAGAGAGAGAGAAAGAGACCCCGCCGCCGCCTCTCCCGCCCCGCCGAACCGCAGCGGCCTCCATGCCGCCGGATCTGGAG
GAGGCGAGGTCCGGCCGACGTCCGCCGCCACTGCCACCGCACCTCCCCACCATGAACACACACAGAGAGAGAGAGACGAC
GACGTCGCCTCTCCTACCCCGTCGGACCGCAGCCGTGCCTCTATGCCGCCGGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.941.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis